Gene detail

Detailed information of ENSVTRP00000034122.1 in Madracis senaria

Genomic Location: :...
NR annotation: XP_022790377.1, splicing factor U2AF 35 kDa subunit-like isoform X2 [Stylophora pistillata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q3T127	Splicing factor U2AF 26 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1L4 PE=2 SV=1
Q8BGJ9	Splicing factor U2AF 26 kDa subunit OS=Mus musculus OX=10090 GN=U2af1l4 PE=1 SV=1
Q7TP17	Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus OX=10116 GN=U2af1l4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR009145	Family	U2 auxiliary factor small subunit	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0089701	Cellular Component	U2AF complex	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0030628	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12836	U2AF1; splicing factor U2AF 35 kDa subunit	-	Spliceosome	ko03041	deepkoala