Gene detail

Detailed information of ENSVTRP00000036047.1 in Madracis senaria

Genomic Location: :...
NR annotation: CAH3149422.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVTRT00000038253

ATGGGAAAAAGTGAAGTCGAGAAACCGCCTAGTTCATCCAAaaccaagaaagaaaaaatatattctcCTACAAAGGTTGTAATCCGCCGTCTTCCGCCATCATTTACCGAAGAGCAATTGAAAGAAGAACTTGGAGGTTTCCCCGAGCATgactttttctattttgttggCAGTAATTTGAGCTTTGGTCCCATATCTTTCTCAAGAGCATACATTAACTTTAAAAACAGAGATGATATAATCAAGTTCAGAGATCAGTTTGATGGTTATTGTTTTGTGGACAACAGAGGTGTAGAATACCCAGCCGTTGTGGAATATGCTCCTTATCAAGCAGTACCTAAAAAGAAAGTCAAGAAAGATCCAAAGGTTGGAACTATTTCCGAAGATCCTGACTACCTGGCATTCCTGGAATCTTTAAACAAAGATGACGAACCACCCCCAAGTATTGAGGCACATTTGGAGGAGATTGAagccaaaaaatCTTCCTCAGGTACAGCAAAGATGAGTACTCCTCTACTGGAGTACTTAAAAATGAAGAGGAGTCCACGTGGCAGGCCTGTGTCGTCTGTAAGTAAAAACAATTACcgcttatatatatattCGTCAAGTTTGTCTTCCAACAAAGACTCTGGTGGTAAAAGTAGCAGCCAGCCACCAAAGGAAGAAAAGCCAAAAGAGGAGAAAGATGCAAAAGCCAAAGAAGACAGTCGAAGGAAAGATGAGCTGGATAGAAAAGGCAGCAAAGACGCAAAGGTAATGACACTaaaaatcgGATTCAAAATCACCTCCAAAAGGAAAAGAGGAAAAGGAAGATTCGGAAGGCGCTCCGACAGCCGACGCTCTGACGAACGACGGCCGGAAGACAGACGAAGTAGTAATACTCGTAGAGACCGAAGAGATACCGGTGATAGTTCCGGAAGCGATCGAGGACGAGACGATCGCTTCCGAAAAGAAAGCGGGAGTGACGGGAGCGCGCGACGCGATCGAAGACCCAACAGTCGAAGGGATTCGCGACCAACTCGAGAACCCGAAGACAAGCCGAAAGGAGGAAAGGAGCCCTTGCCGAAAGCAGCCGATGCTGACAAGGGCAGGAAAAACAGTAGAGAGCAAGAAAAGGAACAGTCAAATGCTACGGCGAAGGAAAAGGAAGCTGAAAAAGATAGGAAGGACGAAGATAGCTTAGGAGCTGGTGATACTGAACTCCCCAGAGAGGAAACAAAGGGAACTTCCAAGGACGAGAAAAGTCGAAGCGAAGAGGAGACAAATAAACGACGAACACGAAACAAGGTAAATAAGCATGGACTTGGTTGTCACGCAACGTTTAAGTTTgaaaAAGATAGAACCAAGGAATCCAGAAGCAAGGAGAATAATCGTGAACCGGAACGTGAAACGAGAAAGAACCGTGACGATAAACCACGCGATCGATATCGTGACGATCGGAGAGAGCGTGACAGAGACCGTGACAGAGATCGAAGGAGCGATCGTGAACGTGACCGTCCGCGGGAGAAGGTGCGTGGGCGTGAAGTAGAGAGCGATAAAAGCTCCCACACTGAGCCTGCAGAAGAAGAACGACACGATAAGAACAAAGCTGAAAGAAACGAGACTTCGATTATTGGGATCGGGGAGTTTCCAATAGAAAATCTGAAGTGGGCATTGGAATGGTTACCACTAGTACTTCCAAAGGATGAAGAATCAGGAAGGTTCTTGGAAATCTGGGATTACAAGATAGCGAATATTCCTGTGCGTGTTTATAAACCAAAAGATCTTGAAGGCAAGAAATCAACTggtgtagtttattttcatgGTGGTGGATTTACTATTGGAAGTGTTGATCTATATCATCCACTGACTCACCGGTTGGCTAAGGAAGCTAATGTTGTATTGGTGTCTGTTGAATACCGATTGGCACCCAAGCACACGTTTCCTTCCCAGTTCCATGACTGCTATGCTGTCGTGAACACCCTACTGGCCACTGGAGATAAGTATGGTATTGATACAAACCGTATTGTTGTTGCTGGAGACAGTGCTGGTGGTAACCTTGCAGCAGCTGTTGCTCTTAAGCTTCGAGATGAAGGCAAACTTCTGGCTGCACAGATTCTTATCTACCCTGGAGTACAGTTCATGGACTTTTCACTTCCTTCTTTTAAAAACCAGGACTCTCCATTACTAACATTGCATCAAGCAGCAGCTTACTGGTCCTATTACATGACAGGAACTCCCAACATGGCCTCTTCCTTTTTAGCGCACAATCATTCCATGCATCTTCGCAACACAAAGTATTCTTCTTACATTGGAGTTGATGACAAGGGGCAGCATAAACCTCAGAGGAAGCCGTTGGATGGAATTCCGAAAGTTGTGCTGGATGGCCTCATTGACTACAGAGCATCTCCGTTAATGGCAGATAGCGTGAAAGGGCTGCCCAAAACATTGTTAATCACATGTGAATTTGATGTTCTCAAGGATGATGGTCTCTTGTATAAGGCTCGTTTGCTGGATGCCGGAGTTAAAGTGACACATTTCAATTACATGACATATCATGcctttttgtttgttcagtCCTCACCTATGTTTGTGACAGAGGAGTTTAATCAGGCATTCAATGATATAGTGGACTATCTGAAAGAGGTGTAG

Transcript

ENSVTRT00000038253

Protein

Uniprot

Uniprot term	Description
Q7M370	Arylacetamide deacetylase OS=Oryctolagus cuniculus OX=9986 GN=AADAC PE=1 SV=1
Q0P5B7	Arylacetamide deacetylase OS=Bos taurus OX=9913 GN=AADAC PE=2 SV=1
P22760	Arylacetamide deacetylase OS=Homo sapiens OX=9606 GN=AADAC PE=1 SV=5

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03467	Smg4_UPF3	Smg-4/UPF3 family	Family	Interproscan
PF07859	Abhydrolase_3	alpha/beta hydrolase fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR039722	Family	Nonsense-mediated mRNA decay protein 3	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR005120	Domain	UPF3 domain	Interproscan
IPR013094	Domain	Alpha/beta hydrolase fold-3	Interproscan
IPR033140	Active_site	Lipase, GDXG, putative serine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13112	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0045727	Biological Process	positive regulation of translation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14351	AADACL3_4; arylacetamide deacetylase-like 3/4	EC:3.1.1.-	Enzymes with EC numbers	-	deepkoala