Gene detail

Detailed information of ENSVTRP00000039093.1 in Madracis senaria

Genomic Location: :...
NR annotation: CAH3119164.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSVTRT00000041498

CGTTCCGCTACACGTGATTCGACTAAGTGCACACTCCATCTTTGCAATCACTTTTTTCAACCATTTCTCTGCTTTAAAGCCTCTTTGTCCTTCTAATCTACAAGAATGTCAACAAATAGACGGTTTTACGTAGGCAATCTCTCCTTGAAAGTGACAAAAGAAGACCTGCGCCGCCACTTTGGTCTAGACAGCACACCTTACGTACGATCACATTCATGGATTGAATTAGCTGTGGAGCGTCCAGGATCATCACATGGGTTTGGATTCATCAACGTCCCCGAGCAACTTGCGGGTCACTTGCTTCAGTTAAATGGTACAAAGCTTTACGACAAATTCATCAAAGTTGAACCAGCTAATAACCGAGGAGGAGGTCGCAGTGGCAAAGTCTCTATTCCTTCGATGCTTCCCTCCTCCTATGTTATGCCAATTCCACAGCTTGCCAATTATTCTTATGGAACAAACCAGTATTATAACCCAAAGGGTCGAAGGAATAATAGGCGACAGCCTCAAGGCCCAAATGATATAGTGACAGTTCCTGAGGATAAAGTATTGCAGCTAATTGACGTGGGTGTCAATCTTCCGAACAAAGTATTTTCAAGAGACATTCGAAACGTCATAGAACAAGCAGAAGTAGTAGGAATCAAACAAATGATTCTAACAGGCAACACTTTACAGATGAGTCAGTCGGCTGTACTTCATGCTAAAGCTCATCCCCGCGTCCTGTATGCATCTGTTGGTGTACACCCTCacttttcaacaaaagaatGGAATGAAAAGACAGCCAAAGAGGTTGAAGAATTAGCGAAGGACCCAGTGGTTGTAGCTATTGGTGAAGTCGGTTTGGATTTTCACAGGAATTATTCAGATGAAAAGGCACAGATTGAAGCATTCACAAAACAGGTTGAGATTGCTTGTGAAGTTCAGAAACCACTCTTAGCACATGAGCGGGCATCACACCAGAAGTTCATAGAGGTGTTGAGTCAGTTTAGTGGCAGGTTACCTTCTATTGTGATTCACTGTTTCACGGGGAGCGTCTCTGAAATGAGTGCCTATGTTGCAATGGGATTTTACATTGGGATTTGTGGCTTTATCTGCAAAGAGAATCCAGGCAAAGCATTAAGAGATGCTCTCAAAGAAGGCGTTTTACCGCTGGACAGGATTCTTCTTGAAAGTGATGCACCTTACATGATCCCAAATGCCCCTGAAAAAGAGTTAGATGACGTTTGCAAGTCGCTTCTTAAAAGGTGTCAGCCAGGACGAAACGAGCCTTGCACGCTTCCTATTGTGGCGCACACTGTTGCAAAATGCCTCGGAGTAGATGCTGAAGAGGTTGCACGTGCCTCAGCAGAAAATGCAAGGCGTGTTTTTGATCTGAAGCTGCCTACGGCTACTGCACAAGCAGCGCCCACTGTAAATGGGTCTGAATAAAGCACTGAATTGTACAAAGACTAGAACTGCAGTACTAAGGAACATGTATCAATGGTTTTATGAGTCAACATCATGGTAGTCACGCTTCTGAAATCAGTTGTAACACCTGGCATTTTTGCTGCACCAGCAATACCTTGTTTAAATTACATTACTTGACAAGTGTCCAACTTGACATGAAATTGGACAACAACTGTGTTCTTGGTTGTTGACTTAAGAGTCTTTAATATTGTGAGTTTTGTTGGATGTTTATTTTGAAGTCAGTATTTGCCGTGATGAGGATTTAGATGTTgttcaaagataaaagatctCTTATTTTATTTACTCGTTTATCATAGCAGAACTTAAAGTTACAGTATAAGTCAAGTCTTGTGCTGAATAATCATtccataaaaataattattaatacagagccttaataattattgcaaaacaTGCCATAAATTTTTATCCTCATTTACAGCAAAGATAATAGAACTCTTGACTTGTGGATTAGTCAAGTATACAGTAAGCAGTTGCATACATATCAGAGTTTAAgaaggacaaatttaaaagggAAAGGTGTTTATTATATGTTTTGTTTATTGACAGCAGTTTATTAGCAGCAGTCGTTAAGTAGCACGTTACAATGTAATAACTGCCCCTTTAAGAAGAGGTCAATTTGAGCTGCACCTATACAATCAAACAGCACCACAAAATGTTATACTGCAAGTTGTTTACTACTATTGTAGGTCGGTtgcaaggtaaaaaaaaaaaggaatccCTAGTATGctgttttaaaatcattgtaACATTGTTGTAAAGCTATCAAGGAAAATTCTACTTGTATTAGTTTTTTGGCATCTATCCTAGAAATGGTTGTGTAGGTGAACATACTGTATAATATTTCTATCTTAACACATATTTAAGTAGAATTCACATCGAGATAGTTCCATTGTTAAATTATGAAAAGTATACAGCCATATATAAAACTTCAGAGTTGGGTTTGTATCTAAGGTGTTT

Protein

Uniprot

Uniprot term	Description
B2VG45	3'-5' ssDNA/RNA exonuclease TatD OS=Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99) OX=465817 GN=tatD PE=3 SV=1
D0Z9R0	3'-5' ssDNA/RNA exonuclease TatD OS=Edwardsiella piscicida OX=1263550 GN=tatD PE=3 SV=1
D0KC77	3'-5' ssDNA/RNA exonuclease TatD OS=Pectobacterium parmentieri (strain WPP163) OX=561231 GN=tatD PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01026	TatD_DNase	TatD related DNase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001130	Family	3'-5' ssDNA/RNA exonuclease TatD-like	Interproscan
IPR032466	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR050891	Family	TatD-type Metallo-dependent Hydrolase	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10060	TATD FAMILY DEOXYRIBONUCLEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0008310	Molecular Function	single-stranded DNA 3'-5' DNA exonuclease activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03424	tatD; TatD DNase family protein	EC:3.1.21.-	Enzymes with EC numbers	-	deepkoala