Gene detail

Detailed information of ENSVTRP00000039929.1 in Madracis senaria

Genomic Location: :...
NR annotation: CAH3164371.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVTRT00000042377

TTCCTCCGCACAAACGTTGCAACAACAGCAATGGAGCGTCTGCTGGACGAAGAGTTTAAAAATGAATTACTCCACAGCTTGAACGAGCTCAGGAAATCGAACATCCTGTGCGACACAACTATTAAAACTGAAGGAGAAGACTTTCCAGCCCATCGATGTGTTTTAACCGCAGCCAGTCCGTACTTCCGGGCTCTGTTTACTTCGGACTTCAAGGAAAACGAAAGCAGCTTCGTGGAACTTAAAAACGTTAAAGGTGCTACACTGAGCGAAGTTCTTCAGTTTATGTACACTGGGGAAGCGGAAACCGACTCTTCGAATGTTCAAGATTTGATTATGGCGGCCGATTTCCTAATGTTGCCAAGTTTAAAATCGAAAGCTTCGGCGTTTTTGGAAGGGACGATCAGTGCTTCCAATTGCCTTGCGCTGGAATCTTTCGCTTCACAGTTTAATTGTGAGTCATTAAACCAAGCCGCTGTCATCTACATAATGGAAAATTTTCTCGCTGTGGCTAAGTCGGATGATTTTAAATCTCTAGACTTTGAGAAGGTGAGGGACTTGATTTCTCGAGACAAAATAGTTGTCTCCAAAGAAGAAGATGTTTACCAAACAGTGATTCTGTGGGTGAAGCACGACGTTTTATCGAGGGAATGTTTATTCCCTGAGCTCCTGAAATGTGTGAGAGCTTTTTCGATGTCAAAGTACAGTCTGAGAAGGATTCTTAATAAAGAAGAGTTGGTTATGAAGAGCCCAGCATGTATGAGAATTCTGCATCAAGGGCTGGATGCCTTTCTGTTTCCGGATCACTTTCAAGTTTTGTTGCAAAAGCCTCGTTTGTGCCTTAAAACTAAGGAGCCAGTGGTGGTCCTCACCGGTGGTCACAAGGTGTACTCAAGTCCTAACAGCTACACCACTGGTTTTGTTCTCGATACTAAGAAGTGGTTGCAATTACCCATGATGCCCGGTCCTCGCACACGACATTCTGCTGCAGTATGTGGTGGTCAGCTTTATGTGGTGGGTGGTATATCTGCTGCTCCTTTCTGTTGCTTCAATCCTGTTCAAAATAAGTGGTTTGCTACTGAAAAGAACTTACCATCCCGTCCACATAGTACACTGTCTACCTACAATGAAGAACTCTACATAATTGGTGGTGAGTATGGTGATTGGCGTCAAGTTAAGAAGTACAATTCCAAGCTTGATGAATGGAAAATGCTCTCGTCAATGAAATTTGCTAGAGCGGCTCACTGTGCAGTTGTCCTTGAAGATCTTGTCTATGTTATGGGGGGTCATAATGGTTATGTGTGTTCAAAGAGTGTTGAGTGCTACAATCCATCAAGTGACCAATGGACTCAGCTTTTAGATATGAACAATGCAAGAAGATTTTCTGCTGCTGCGGCCATCACTGGTGGCAGAATAATTGTTGTAGGTGGCTATAGTAACATGTATTTCAAgactattgaaacaagttgtgaaatatttGACCAAAACTTAAATCAGTGGAGCCTGGTCTCTAGTCCCATAGTGCCCCGTGCAGCATGTGGCATAGTCAGTGCTGAACATTGTGTGTACCTCTTTGGAGGAGAAGATGCTAATTGGGAACGGTATCAGCTTGACAGTGTTGAGTGTTACATTGTTCAAGAGGACAAATGGATCAAAGCTGGTACCATGCCAGAACAATGCAGTTGCCTTCAAGCTTCCTTGCTGCAATTACCAATGAAGTATACAGAAACTTGTCTGTTTTGGTTTAAGGATGAAAAAGAAGAAGTCATTACTACAAACGTATGGGTGAGGCAGTATTGGAATGATCCCAGATTTTCTTGGAACAAAACCGAATATGATAACATCTCACAGATCATCATCAACCCTGACAAAGCTTGGTTACCAGATGTCGTCTTATTAAACAGTGCTGAAGCAATGTCAGACGGGCGCGGCACCGCAGCTCGCCTGGTCGTAAAGCACGATGGGAATGTGTCTTGGTTGAACCCAGTGATATTCACGAGCTCGTGTGAAATTGACATCACCTTCTTCCCATTGGACGATCAAACATGTGAGCTTAGCTTTGGCTCGTGGTCGTACAGCAATAAATTCCTGAATGTTCATCCCCGAAGAGATGGTGCGGATCTAAGCTCGTATGTTGAGAATGGGGAATGGATCCTACTTGGCGTAAAATCAGAACGCAGACTCTTAACGTACGATTGCTGTGAAGGAGAGTTCCCGGATGTGACGTACCATGTGCAATTGCGCAGGCGCACTCTGTTCTACATGATGAACTTCATTTTGCCATGCGTACTGATTGCAGTCCTAACCCTACTCGTGTTTTTGCTGCCGCCGGAGTCTGGAGAGAGGATGTCTTTTGGAGTCACAGTGTTGCTGTCGTTTACTATTCTGCTGTTAATGTTGATGGCGAAGCTTCCTGCCACCTCCAAAGTCATTCCTCTGATTGCCGTCTATTACGCCTGTACTATCATTGAAGTGTCAGCGGCAATGGGAATGGCGTGCCTCATGCTTCGTTTTTACCATCCTGACAATTCCTCTGCTCCTATCCCCGACTGGATCAGGGTCTGTGTCCTTAACTACTGCGCACGACTGGTACGTTTGAGCACATCCGCTGGACGAGTTCGACAGGCGCAGATTGTCCAAGAGTGGCGTCAAGTAAAGTTGCGTGAGAACAGGGGCAAAGAGCAAACGAACATGACAATTCTTACAGACAACATCTTCAAGAAAGAAGAAGCAGACACCATGAGGGAAGAATGGAGGATGGCAGCCATGATTATCAACCGCCTCTTTGCTTGGATTTATCTCATCACTATAATCATAACACTGGCTGCTGTACTGCTCAAATCACCACGGTTTAGGAAAGGGGAATTATGA

Transcript

ENSVTRT00000042377

Protein

Uniprot

Gene family

Uniprot term	Description
P49582	Neuronal acetylcholine receptor subunit alpha-7 OS=Mus musculus OX=10090 GN=Chrna7 PE=1 SV=1
Q05941	Neuronal acetylcholine receptor subunit alpha-7 OS=Rattus norvegicus OX=10116 GN=Chrna7 PE=1 SV=2
P22770	Neuronal acetylcholine receptor subunit alpha-7 OS=Gallus gallus OX=9031 GN=CHRNA7 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|BTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13964	Kelch_6	Kelch motif	Repeat	Interproscan
PF00651	BTB	BTB/POZ domain	Domain	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF02931	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF07707	BACK	BTB And C-terminal Kelch	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR038050	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR018000	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR011705	Domain	BTB/Kelch-associated	Interproscan
IPR006202	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR006029	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR036734	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR006201	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR036719	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45632	LD33804P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005230	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0034220	Biological Process	monoatomic ion transmembrane transport	Interproscan