Gene detail

Detailed information of ENSVTRP00000042567.1 in Madracis senaria

Genomic Location: :...
NR annotation: XP_048775517.2, uncharacterized protein LOC125680122 [Ostrea edulis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSVTRT00000045237

ATGGAAGACAAAAGCAGTGTTACTGAGTCAGAAACTTCATTTATTCCGCAGACGTCAAGGAGCGAACAAGTCACACCCCAACTGACATCTTCTCTGTGGCATCAGTCCGACGACGTGAGAATACCTGTTGGAAATTGTACATACGTTAGAGTGTGTAAATACAAAGGACAAACATATGTAAATATTCGTGACTACGCAAAAGGAGAAAACGGTTATTTGTATTCAACAAAAAGAGGTATATTGCTGACTCCAGAGCAGTGGTTTAATTTAAAGAAGAAATTCAGGGAAGTAGATAAAGAACTGAAGCGGAATGATGACATGTGGGATGTTGATCTGGCAGACGTGACAAACATAGCATCATACAATAACGAGTACAAGTTTTTGTTAATTGTTATTGATGTTTTTACCAAACATTTATGGGTACAGCCTATAAAGAATAAAACTCACAAGAGTGTAATAGACGCATTCagaaaaatttttaaagaaacaaataggAGGCCAAGGACCTTGAGGTCAGACAACGGAACAGAATTTAAAAACAGAtggtttaaacattttttaaaaggaGAAGGTATACATGCATACACAACAAAGAATGAGACAAAAGCTAATTTTGCCGAGAGAGTTATTCGCACACTGAAAGGCATGCTATACAGGTATTTTCTACACAATCAAACGTACAAATATACTGATATTCTTCAGGAACTGGTGTATAATTACAATAACCGACCACACTCAACACTTGGAGGCATATCTCCTGTTCAGGTAAACAGGTTAAATGAGTCTAAACTATGGAAATATATGTACATAGACAAACTAAAACTGCCAAAGAGGAAGAAGCCAAGGCCTTATTCATATAAAATCGGTGAAAATGTTAGAATTTCTCACATGAAGTATGTTTTTCAAAGAGACTATCATGAAAAGTGGACTGAAGAAGTCTTTATAATAACTCACCGCTGTAGAAAGCAAGGCATTAACTTATACAGAGTAAAGGACTTGCTGGATGAGGATGTTGATGGTCATTTTTATGAAGAAGAACTGCAAAAAGTAACAAAAGACATTAATTCATTatataaaatagaaaaagtgcttaaaagaagaaaaagaaagggaaattcTGAATTATTTGTGAAGTGGTTAGGCTGGCCAAAGAAGTTTAACACGCAATGTATCACCCATGTACTTGAAATTATCCAACAAGGAGTTATTAAACCTGAACCTAAAAACATTCTGTGGTTATATGCTGAAAACCAGCCGTTGTATAAGTCTACGAGAAATGTTGTTTTTCACCAAGGCATTCCTGAAGatattgaaaatttttttaaccCTAAAATTAACAATTTACTGGTAATTGACGACTTAATGACAAAGTGTCATAGCGATGAGAGAATGACACGCTTATTCAGTGTTGGCAGCAGTCATAAGAATTTGAGTGTTATATTTATAGTTCACAATTTGTTTCATCAGGGTAAGGAAATGCGAAACATAAGCTTAAATTCACATTACATAATACTATTTAAAAACCCAAGAGACAACCAACAAATTAGGACATTGGGAAGTCAAATGTATCCCGGAAAATCGAAATTTTTATTACAGGCATTTCAAGATGCTACCGCCAAGCCTTTCGGGTATATATTTATTGAtctaaaagcaaaaacaccagaCATTTTAAGAGTGAGAGCCAATATATTACCACATGAAAAACAAATAGTGTATATCGAGGACAATAATACTGAATGGCCAGTATATGTTGATTTACCGAGCAGTAAGCATGCCTCAGAGACAACGAGCAAACGCCCAAAGGGCACAAAACGCCGCAAGGTGGCAAGTCGACGCAAGACTGGCACGCGCAAGACTCGCAAGGGAAAACAGACGAAAAAATATAAGACTTATAGCAAACGGGCCATTTCTTCAATTATTGGCTCGGAGCAATGCAAAGCGAAGAGTAAAGTTACTAAAACAAGCAACAAAAGACGAACTTGCAAGTATATTTGA

Transcript

ENSVTRT00000045237

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF02229	PC4	Transcriptional Coactivator p15 (PC4)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009044	Homologous_superfamily	ssDNA-binding transcriptional regulator	Interproscan
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR003173	Domain	Transcriptional coactivator p15 (PC4), C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46585	INTEGRASE CORE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan