Gene detail

Detailed information of ENSXFYP00000006171.1 in Duncanopsammia axifuga

Genomic Location: not available for this species
NR annotation: CAH3163805.1, unnamed protein product [Porites lobata]
Species abbreviation DAXIF · all data for this species · gene families

Sequence

CDS

Transcript

ENSXFYT00000006765

ATAGGTATATTCTAGCATCTGGTTAATAACTCTTGGCTCATATTCACTGATtcccatttcttttaaaatagcTCCCATTACTAAAGCATCTTTAGGCGTGCTTTTTGCCGGCAAAGCTCCTTCGCTCGCTTCGTTGTCAgttttgtccgccattttgttttacgACAATGAGGAACTCCGCTGAGTTATTAGTATGATGAGCAACCCCAAGATGCATTGCAACCCTCTAAATCAAAATGGCGTCCGCATTTCCCCGAGAAAGAAGTATGAAAGATGTGATAAATACAATACTAGATGACTATGAAAAGGCGACAAAAGAATTATTCGAGAGTCTATCAGCAACCTCGCTTTACCGAACGACAAAGCAAGATGCTAGCTCTGGAGATTCAACTAAGGCCGTTGATCAGCTTATTGCAAAGGACAAAGAACTGCAAGCAGCCATTAAACAAGTGCAAGAACAGCAAGCTAGACAACAAGAAATCCAAACAGTTAGAGAAGAAATTTCCAAGAAAGATCAAGAGATTCTTAATCTTGAATCCCAACTAAAAGAAGCTGAAAAAATACTAtcCCAGGCATTGTTtcaagcaaagaaaaaattatcTGCCATAAACCAGGCTAGTAAAGGAACAGTTTCATCGGAAGAGCTTATCAAGTATGCTCATCGTATCAGCAGTAGTAATGCTGTAGAAGCACCCGTGTCATGGATGCCAGGAGATCCCCGGAGGCCATACCCTCAAGATATTGAAATGCGATCTGGTTGGCTTGGAAGACTTGTGGAAGGTGTCCCTATGGAAACTGAACAGCCTATTGGTGATTCAAATCTTCAAGAATTTATGCAACCTTCTTCTTCTTTAAATTCACAGCCCGAAAGTGGACTTGGACACACAAATGGTCAAGCTGCAACCTTTTCCTGGCAGAGCAATCTTTCGGGGGGATCCACatccttacagCATGATCCCTCTTCCAGCTTCGATTTGATAGCAAACAACCTCACAAAGGAAGTAACAAATGGGAGGCAAGATCAAGGTGTCGAAGAAGTGGAGTtcatgtcatcatcatcatcatcgtcatccagTGATAGTCCTTAAAGACTGATGTTGTAAATTAAGGATCTCtgcaatcatcatcatcatcatcatcataactgTAGCAACTATAATCAATAGTTTCTAAACACTGTAGTGAACTTGCATTTACTgccacatctacatctacatttacatTATTTAAGTTGGTAAAATCCATAGGGACATCATACCAAGTAGTAAAATAAAAGTTAATCAGACAACTGCATAACTGGGATTTCAAAGTGTTGACAGAGTCTGTATTTAGTGTTTCATTTAGAAGGGAATCCACTGTTTATCGTCCGCGGGAAAAGGTAGTGAATAATATTCTAAATAGCTCTATATGAAGGATAGTACTTGTAGCCATACCTTGTGCACGTTCTAGTCTCAGTGTGTGGGATAAGGTAATGAGCTACGCTAATTTCAAGTAAACCGCGAAACATTTTGTACATAAGAGTCAGCCGCGTCATTctcctccttttcctttttcctttatTCCATCCTAAAACTAAGTATTTCAGAAACACCCTAGCTTTCCGTTTATAATTGTTACAGCGGAAGCGCACTGCGCACTGTAGCTTGGATCGTACGATAGCCTGATAAGTCATGATATCCTGTTAATATGAACACCGCAGAGACCACGGAAATTGTCCGTGCTGACgggtccaccgcggtcaaacgtctgaggcgtttttcgttttatttagtgggatttcatttaatatttagtggaaacatgggcaaggatgtatagaataattagttaatgtaactatctttttatttttctcaaaataatgagcttcttttcgttgaaaacggTCTACGTCCCAGGGCAAAATTATGCAAATGGAgcggacaattctgcagttcatttcagttttcaaacgcttagaacttttttagtaaacaaataaaacgtttagtgaattgacaaggtattggtaatatattaaaacaGTGaagcagtgaaaatgacaaccttagctttaaagtactttgcttataATTTGCAAATTTCTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q177A7	Mediator of RNA polymerase II transcription subunit 4 OS=Aedes aegypti OX=7159 GN=MED4 PE=3 SV=1
Q561X3	Mediator of RNA polymerase II transcription subunit 4 OS=Danio rerio OX=7955 GN=med4 PE=2 SV=1
Q9VS38	Mediator of RNA polymerase II transcription subunit 4 OS=Drosophila melanogaster OX=7227 GN=MED4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006133 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10018 all species →	Med4	Vitamin-D-receptor interacting Mediator subunit 4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019258 all species →	Family	Mediator complex, subunit Med4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13208 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0070847 all species →	Cellular Component	core mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15146	MED4; mediator of RNA polymerase II transcription subunit 4	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.