Gene detail

Detailed information of ENSXFYP00000010518.1 in Duncanopsammia axifuga

Genomic Location: :...
NR annotation: CAH3031078.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSXFYT00000011757

acttcatgatgtccttccatcaccggcgGGACTTAAACGTAATGGCTTAAAACGGCACACAGCTCATGTGTACGTTGACAAGCAAGGGCGATTGATATGCTGGCAAAACGTAAATGACCGTTTTTTCGTTCAGGTTGTTGGTGCAGGTCAGGGgtattgcggtcgcatattttcATAGCCCACATGTGTTGCAATGGCATCCAGTTGAGTAGTTGTAGCTTATGTTTTATGcagtttggaaggaactacgatTAAAATGTACAGTAAGCGCTGAACGAATCAGAGTCTGCTCTTTTTCAGATAAGAATGAATGTGACACACCTGGAACATGTAGTCAAGTTTGTTACAACTATAAAGGAGGTTATAAATGTCTTTGCCGAGATGGCTACTTTATGGAACCAGACCGTCACGGCTGCAAAGCATTGGGTGACGAAGGGTTCCTCATTTTTGCCAACCGCCATGACATTCGAAACTTGACATTTGACTCTTCAGACTACACAGAATTGATACCAGGGCAGAAGGGTGCTATAGCCCTGGATTTTGACTTCAGCAGGGGGTATATATACTGGACCGATGTCATTGACGAGAACATCAAGCGGGCTAAGATAGAATACAATCCCAAAGTTGAAGTTCTTGTCAAGATCAACTTAGATACCCCAGATGGAATTGCTATTGATTGGATCAATAGGAAGATGTATTGGACAGACACAGGCAACGATATGATTGAAGTGGCTGATTTAGAAGGCACTGATCGGCTAGAGTTAGTTAAAACAGGACTGGAGGAGCCTAGAGCAATAGTGGTACATCCATTTCTCGGctacaTGTTTTGGTCAGATTGGGGTGAAAAGCCAAAGATTGAAAAGTGTGGAATGAATGGTGATGAAAATACAAGGCATGTAATAATCAGTGACAACATTATGTGGCCAAATGCACTGACCATTGACTACACTATTGACCGAATATGGTGGGCAGATGCCAAGCTTCGTGCTATCGAGTCTGctgattttgatggaagagaCCGGCGAATTATCCTAAGCGAAACTATCCACCATCCATTTGCCATGACAATATTTGAGGACTACATGTACTGGACGGATTGGGAGCATGGTCATGGCTCAATTAACAAGGCTAATAAGTTTACTGGAGAGAAGCGATATACTTTGAAAGAGAGCTTGTACAACCCTATGGATTTACATGTTTATCACGAACAGCGACAACCCAGAGGAGTGAATCCATGTAGATCAGCAGGCGAATTTGGGAGCTGCAGCCACATCTGTTTACTGGCTCCTAGAGTTCTTTACCCGGATGGTTATTCATGTCACTGCCCACCAGGTGTCATGCTCCTCTATGATTCTAAAACCTGCAATACAACAGGTGCTTTTAAATGCAAGAAAAATACTTGCTTAAATGGGGGAACTTGTCATCCAGGCAAAAACTTGGAGCTTCCAACATGCATATGCCCtttaaaatttaaaggaaaacacTGTGAAataacaccaccacagtctaaaccaaccacaacaacaacaccaaCACCTGCCACTCACAAAATACCGTGGGTGCAGGCCAGGAGGGAGGAGGAGGACGTTGGTGTAACTGTGGGGATTTCAATTGCTGTCATTGTCCTCCTCTCCGCTATTGGTCTCTTAGCTGGTTGGTTAGTGTACAGAAGAATACAAAGAAACAATCGTAGATCAATGAACTTTGACAATCCTGTGTATAAGAAAACAACAGAATCAAACAGCTCACTGGATAGAATTAGTATACACTTTGGCGGTCATTCAAATGGGAAAAATCACAAACAGTCTTTATTGGGTTCCTTCCAAAATGAAGTAGAAGTGAGCAGTTGCTAGCATTTCAACTGGCACCCTGACAGTGGAGGTAACATTCTGCAAGAAACTGCCATAGACATCTCTATTTGTTAGCTCTTTTATCTGAGATTGTAGAGTTACCTATTTCCCTTCAAGTTAAGCAAGTGCATGTATCTTGATTCCTCTGGAAGCTTTCATGGTTTAAAGGTTCACCTTATCATACAGTAAATGATAAATTCACATACTCTTTTACCTGTAGTTGGAAATATCAATTTATTCTCACTTCTGATTTCTATTCAGTTCTTTTAATGAAGTTGTTAGAATTTGCATGACATCTAGAGGAATTGAGGACATTGTCTCACTGCAGGGTAGATGGGCTTCATCACTTAACAAAACCAATCTTTAGCTTAGATTTGTGCTTTTATGcacattgtaaaaaagctgGTCTTTTTTTGTGTTGAACTCTGTAGAGTAACTTCAATGGCTCTGATTAATTAGTGATTACAAGCAGAAGGAACCTCCTCTGTCATGGTAAATTTGCACATAGGTTATCAAATTAAGaggtatataattatataaatattaTATAACTAGTTATATAGTTATATCGAAGCTCATCCTGGTGATGTTACAGCTTCACATACAGATgtacaatagttattatttaattctaattttgcaGTAAGGTTGTTTTCATTATTTGTCTGTTAAGAACCTTTCATTGAGGGCCTCTAATAATGGTGTTAAACaagtttttttattatatttttctttatcaAAGGGTATTTGGGTGTGGgttaggagaaattgtattcATTACAGTTGTAAACATACTACCAACAGACAAATGATAGATAAGAACTGTTTAGTTGAGCCAGTATCCAGAACATaacatgcacacacacacattaaaggtctttctttctctttctcttatacatgtacattttttagTGTTGACATCTGTTGTTCCGTAAGGTGTATCATGGTTTaagttgttttt

Protein

Uniprot

Uniprot term	Description
P35951	Low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Ldlr PE=1 SV=2
P35950	Low-density lipoprotein receptor OS=Cricetulus griseus OX=10029 GN=LDLR PE=3 SV=2
P20063	Low-density lipoprotein receptor (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=LDLR PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan