Gene detail

Detailed information of ENSXFYP00000012258.1 in Duncanopsammia axifuga

Genomic Location: chr13:19877400...19892191
NR annotation: CAH3018382.1, unnamed protein product [Porites evermanni]
Species Duncanopsammia axifuga · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSXFYT00000013575

TACGCATGAAAACAATCTCTTTCTCACCGACAAAAGCGAACAGCTGTGCTGAGTACTCTTGTGAAAGGCTCGTGATGTCTTCTTCGAAAAGGCCAAGGCTTTGCACTGAATACTACCGCAAAACTAAGGCTAGCTCTTCAAAAACCCGAAACAACTGTCTGGAGAGAGGCAAACCGCGAAGAAAATGCAACGTAGAAGATCCGTtgattcaggagaaaaataataGCGCGGAAAAAAACGAGTGCAAGATCGAGGAGAAATCTGACATGTCTTTGGATTCAAGCCTGTCGCATTTGACAAGAAATCAAGATAAAACATGTCTCAGTTCTCGGCGCATTGTGGCCAGCCAAAATCGAAAGAGATCTTGCAGACGTATAAACACAAGGCATCAACAGTCTTCCTCACAGAGAGGGAATTTGAAATGCTATATTGAAGCGGTCCCAGATGAAGTGCTGCTCTTGATATGTTCCTATCTTCAAGAGAGAGACCTATGCAGAATGGCCCAAACATGTTCTCGACTCAACACTATATGCCAGGATGGATGCTTATGGCGATTTCTTTACAGTCATGTGTTTAATATGAGGAAGCCATTGGTAAAGACATTTGAAGGTGTCTACATTGAACAAGAACCCGGAGATGACTTATGTTGGAAAAAATGCCTTAGTTCACTGTATGATGCCCACCATGTTCATCGTACCATAGCAAAACAGAAGAAGCTAAATCCTGCAAGATACACCGGAAGAAAAATCAGGTATCATGAAACAATTAATGAGGCTCTTGAAGCTGTAAAGTGTGATGGTGTTGTTATAGTCCACGGTGGTGTATATGATGAGCAGTTGTCAATCACCAAGCCTGTTGCCATTATTGGAGCAGcTGAAGGTGAAAGTGAAGGAGTGGTCATTCAATGCAGTTCTTCAACAGTTGTTACTTTCACTTCAGGATCATCATGCACTTTCTTGGGACATCTAACCTTAAAgAATTGTCCTGCCACTGaatctcagccaatcagatcaGGCTGTATAGAAGTTGTTGATGAGTGTTCTCCTACAATATACAACTGCAAGCTCACCAGTCTTGCAAGTGCTGGTGCAACAGTCTATGTGCATGGCAGGGGAGCAAGACCTACTTTGTCCCAGTGCCTCATATCTGACTCTGAAAATGTTGGCATCTTTGTCACAGATGGAGCACAGGGAACATATGAAGACTGTGAGATAACAAACATCAAGCTAGCAGGAGTATGGGTGAGGAATCATGCCAGCCCTGTCATGCGGAGAAATAAAGTGCATCACGGAAGGGATGTCGGTTTCTTTATCTTTGACTATGGACTGGGTTATTATGAGGGGAATGATGTCTACAATAATCGTATCGCTGGTTTTGAGATTCGCTCTGGAGCAAATCCAACAGTGGTTGGTTGCCAGATCCATCATGGTATGACAGGAGGCATCTATTGTCATGATGACGCACGTGGAGAATTCCTTGAAAATAAGATCTACTCCAACACGTATGCTGGTGTGTGGATAACGTCACAGAGCAATCCAACCATTAAAAACAACGAGATTTATGATGGACAGCAAGGAGGAGTTTATGTATTTGGCGAAGGGAGAGGATTGATTGAAGGGAATAATATTCACGACAATGCACTGGCTGGAATTCAAATCAGAACCAAAAGTAATCCTATTGTTCGGTGCAACAGAATACACAGTGGACTTCACGGTGGAATATATGTGCATGAAGAAGGCATGGGGCTAATCGAGGATAATGAGATCAGTAATAACACACTGGCAGGCGTGTGGATAACTACAGgaAGTTCACCAACTCTAAGGCATAATAGAATACACAGTGGAAAACAGAAAAGAGACGCACTGAGTAGGACTGGGGACGAACAACTGCACTCGAGGTTGGCGTTTACTTCTACGACGGTGGCTGCGGAGTTCTCGAGGAAAATGAGATCTTCAATCACAAGTACTCTGGGATACAGATAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TSL3	F-box only protein 11 OS=Rattus norvegicus OX=10116 GN=Fbxo11 PE=2 SV=1
Q86XK2	F-box only protein 11 OS=Homo sapiens OX=9606 GN=FBXO11 PE=1 SV=3
Q7TPD1	F-box only protein 11 OS=Mus musculus OX=10090 GN=Fbxo11 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003959 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05048 all species →	NosD	Periplasmic copper-binding protein (NosD)	Repeat	Interproscan
PF13229 all species →	Beta_helix	Right handed beta helix region	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007742 all species →	Domain	Periplasmic copper-binding protein NosD, beta helix domain	Interproscan
IPR051550 all species →	Family	SCF Complex Subunits and Alginate Epimerases	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR006626 all species →	Repeat	Parallel beta-helix repeat	Interproscan
IPR022441 all species →	Repeat	Parallel beta-helix repeat-2	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR006633 all species →	Domain	Carbohydrate-binding/sugar hydrolysis domain	Interproscan
IPR039448 all species →	Domain	Right handed beta helix domain	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22990 all species →	F-BOX ONLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSXFYP00000012258.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Duncanopsammia axifuga tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Duncanopsammia axifuga, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →