Gene detail

Detailed information of ENSXFYP00000016489.1 in Duncanopsammia axifuga

Genomic Location: :...
NR annotation: CAH3156341.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSXFYT00000018513

aaaaattatCCCGAAGTTTGGTTTCATGGCAACTGGAGTAGCTGGTCTTTATGGCCAAACTGTAACAAGCCGTGCAATCAAGGATCCAAGACAAGGAAGCGACTGTGTGATAACCCTGAACCAGCTAATGGCGGGAAAAACTGCGTAGGCCCAGCAACCGAGAGCGAACCCTGtaatcttgacccatgtccacctGATGACATAAGTTATGATGTCAGGTTTACAGCAAAAACCTGGTCTACTGACCTGGCTGATAAGGAAAGCGAAGGTTTCAAAGACTTCAAGGATAAAATATTATTAAATtacatgtttgtttgttgtttttttcttaggaaAGGAAGCGTTATTGTCAGCTTTAACGTTACTTACATGGCAGTAGACTCACTACAGATCGTTGCATTGCAAGAGCAAATTGAAAGTGGAGGAACTTTAGGTGGCGATTCGGCAGAGTTActtaacatttcaagcaattatGTACCAAGTGAAGCGCCAGAGATACTAGAAGCAACAAGTCCCACGTCAACGACTATCGACATCAAATGGACCGAGGTTACACAGCTAAATTCAGCTAACCTTAAAGGATATGGTATCGTCTACAAGAAAATAGGCGATAAATTCCAAGTAGGTTTCCTTAAATCCGTGCTCCCGACACCTCAAGAAGCAACACTGGATGATCTAGAAAAGTTCACAAATTATACAATTCGCGTGTTTGCTTTTACATCTCTTGGAAACGGAGTTTCAAGCCAGCCGTTCTCTTTACCGACTCAAGAAGACGGTAAGCTTACAATGTTTTTATTCGGCAGTCTTTATATAGCTGTACTAAATTCAATTGCAATATCtaTAAATGATGAACGTGTTTCATGCGATGTTGAGCAGAAACAGGCTCTATTCCATTCAACAATCCCCAGTCAAACTCCGCCAAACACCATTGTCCAGTCCACGAGTTCCAGCACAATCGATGTGTCCTGGGAAGGTATTAATCAAGTCTACGTACATGGAATACTATTGGGATATGAAGTTAGACATGCTAAGGATGATGGCTCGCAACTGGTCTGGGAAACTGACACCCTGGATCCTGATACTAACAAAATAACTATAAGTGATCTAGAATACTTCACGCGATACAAGGTGGTAGTTTGTGCCAAGACTTCCAAGGGGTGTGGAAAGGAATATTCCGCCATTTCTTACACGTGGGGCGATACTCCTGACAAGCCACCACAGAGTCTCACAGCTGATAATCTTACCTCAGAAGCAACCATACCAGTGCAATGGAGTCCTGTTCCTAATGGTCATGTAAACGGGCTGTTGATGGGTTATTCCATAAAGTATCAAAGAATTCGGACCGCCGAAAGATCAGTGTTTTACCGCACAGAGGAAGAAACCATGATTGTTAAACCAAACCAACGTTCAATTCTTCTTCCAGTTCAAACTTATTCAACGTACAGTATTAAAGTGGCGGCATTTACCCAGGCAGGAATGGGACCTTATACTGAATATGTGTACGCTGAGAGCTGCCGTTGTCCTAAAATTCTCTACACAAACTACTGGTCAACATTTCCATATCTTAAGGTTACGGAGGACTATAAACTCGAAGGACTTTTTAGCGGGATCGTCACAGACATGATACACACAGCTTGCGGGTATTGTCCAGCGTACGGCGATACAACAATCGACATAGCAACGAACGGTAAAGGAGGTCGCGCAGCCAAAAAAGGCATCTTAGAAGTCCTTGCAGACTTTGATGAGGTTCCACAGATAACGTTTCCGATCTACGGTAACCAGTACGTCACGACATACATGGGAGCCAATGCTTATATCAACCTTGTGGAGTCCCCAGGGATAGCTTTTATTGCAACTGCTAGGCCCCCCGGTGAAGCTGCTACGAACATGGTAATGGCAATATTGGGGACTATTCCTTTGATGGTGCTGTCGGCATGCTTTGCTTTTGTCTCTGGGTTTATTATTTGGCTTTTGGACTCTAAGTCCAATCCAGATGAATTTCCACCCAGTTTTATGAAAGGCGTCGGTGAGGGATTCTGGTGGTCTTTCGTCTCCATGACAACTGTTGGGTATGGTGACCGTTCGCCTAGATCCATTGCAGCCCGTATTTTTAGTATTGCGTGGACCTTAACTGGACTCGTTATCATCGGAATCCTTGTTGGTGCAATTGCCTCTTCACTGACATCAGTAAACGTACAAAAAGACATCACTCTGTATAGCACAAAAGTTGGAGCCATCCATAACTCTTCGGAATATCGCCTTGGAATATTGAAGAATGCGAAAGTTAATACAGAACATAAGTATACCAATTTGGATGAGATTCGAGCAGCGTTGGAAGATGGTGAAATAGATGGCGCTTTGTTGGACACTTACGTGGCTGCAGAGAACAAAGGAACGCTTCTTGACGACAGGGTGTTTGTCAAAGATATTCTTGATCATCCATTTGGTTATGGAGTGGTTCTTTCAGGAACGGCCAGAAATGTCGAACAAAGATGCCGAGATTACATCAGCTTGCATATcagcaaaatatataaaatCATAGAAAACAAGACAAAGACAGTTGACTCGTCTGATGGCGAGATATCCGAAAGTACGGGCTTATTTGACGGTACATCGCAAATGTTCATTGTGGCTATTTCATCTCTGCTTGGTCTCTTAGGAGTAGTTATCATAATCGGATTTTTGTATCACTtgatacatttctttttcaatacaGGTATTAAGTTAAAAGCCTCCTCGTCACATTGTGCTTACAAAGAGTCCCTAGTGAAAGAGATGAAAGAGTTCGTGGATGCATTCTATTGCAAAATGTCAAGCAAGATCCCTTTAATgatagaaatgaaaaaaagggaATTGAGAGAAATAACCGAAAATACGAGAGACATGAAGAAAGATAAGAAGTTATGCAAGTCAACCAAAGATGCAAATTATTCTTTGGAAAATATGCGTTGCAACAAGCCAGTATATTCATCTACCTCAATACCTGGTGATCCTGCAAAGAGGTGCGTTCACTATGTTACAGCAAAGAGCATTCTGCAGCAATCACGGGAATGGCCAGCCTCTTCAAGTACTGACGATACTGTAAGCGTTGACAGCGCTTGTCCTTCGATGACATCCAATGACTACCGGTCAGTCAGCCCAGGCGATGTGACGTATGAAGACAATCGTAAAGCGATtgaaaattattaa

Transcript

ENSXFYT00000018513

Protein

Uniprot

Uniprot term	Description
P23468	Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens OX=9606 GN=PTPRD PE=1 SV=2
Q64487	Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus OX=10090 GN=Ptprd PE=1 SV=3
B0V2N1	Receptor-type tyrosine-protein phosphatase S OS=Mus musculus OX=10090 GN=Ptprs PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07885	Ion_trans_2	Ion channel	Family	Interproscan
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013099	Domain	Potassium channel domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR050379	Family	Type I Cytokine Receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23036	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0004896	Molecular Function	cytokine receptor activity	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0019221	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0019955	Molecular Function	cytokine binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan