Genomic Location: chr2:52868730...52877089
NR annotation: CAH3175755.1, unnamed protein product [Porites lobata]
Species Duncanopsammia axifuga · all data for this species · gene families
| CDS |
| ENSXFYT00000020597 |
| Transcript |
| ENSXFYT00000020597 |
| Protein |
| ENSXFYP00000018455.1 |
| UniProt accession | Description |
|---|---|
| Q9WYJ1 | L-threonine ammonia-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0356 PE=1 SV=1 |
| Q74FW6 | L-threonine ammonia-lyase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=tdcB PE=1 SV=1 |
| P55664 | Putative threonine dehydratase OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a01490 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003566 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00291 all species → | PALP | Pyridoxal-phosphate dependent enzyme | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001926 all species → | Domain | Tryptophan synthase beta chain-like, PALP domain | Interproscan |
| IPR036052 all species → | Homologous_superfamily | Tryptophan synthase beta chain-like, PALP domain superfamily | Interproscan |
| IPR050147 all species → | Family | Serine/Threonine Dehydratase | Interproscan |
| IPR000634 all species → | Binding_site | Serine/threonine dehydratase, pyridoxal-phosphate-binding site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48078 all species → | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003941 all species → | Molecular Function | L-serine ammonia-lyase activity | Interproscan |
| GO:0004794 all species → | Molecular Function | threonine deaminase activity | Interproscan |
| GO:0006565 all species → | Biological Process | L-serine catabolic process | Interproscan |
| GO:0006567 all species → | Biological Process | threonine catabolic process | Interproscan |
| GO:0009097 all species → | Biological Process | isoleucine biosynthetic process | Interproscan |
| GO:0006520 all species → | Biological Process | amino acid metabolic process | Interproscan |
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01754 | E4.3.1.19, ilvA, tdcB; threonine dehydratase | EC:4.3.1.19 | Valine, leucine and isoleucine biosynthesis | ko00290 | deepkoala |
Genes whose expression across the transcriptome samples of Duncanopsammia axifuga tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Duncanopsammia axifuga, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
