Gene detail

Detailed information of ENSXFYP00000028158.1 in Duncanopsammia axifuga

Genomic Location: chr3:33795424...33806749
NR annotation: CAH3174456.1, unnamed protein product [Porites lobata]
Species Duncanopsammia axifuga · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSXFYT00000031532

TCCATAAGACCCCATTATGACGTAGTGGTGGTTGGCTCAGGGTATGGCGGATCTATCGCAGCCAGCCGTTGTGCCAGAGGAGGCCAAACTGTGTGTGTGTTGGAGCGAGGGAAAGAATGGTCACCCGGCGATTTTCCAGAGTCATACTGGGCGGCCTCCAAAGAAATTCAAATTCATCCCGGTGGGAAAGAAACCATAGGGGAATCATCTAGTCTGTATGAGTTCTATGTCACTGATGACTTGAGTGTTGCCCAGGGATGCGGGCTTGGAGGTACTTCGCTCATAAATGCCAATGTTGCTCTTGATGCTGTTCCTGGGGTGTTTGAAGATGCGTTATGGCCATCGGAACTCAAGCAAGACCTTGATAATTTACAGAAGATTGACCGAAAGCATTTCGTAGAGATGCTGAAGCCTACCCCTTATCCAGATCATTACCCGGCTCTGGATAAAATCCATCGCATGAGAGAAGGCTTTGGTGCATGTGACATTGAGGACATTGATAAAAACTATTACAAAACTCCTCTTTATGTAACATTTGAAGACACACCGTCCAATCACGTTGGAGTGCCACAACCGAAGTGCACAGGCTGTGGAAACTGCTGTGGTGGATGTAATGTCGGTGCAAAGAACACACTAAACATGAACTATTTGCCTGATGCTAAAGCTCATGGGGCAGAGATCTTCACTGAGgtAGAAGTCATGTCAGTGACTAAGGCACCTGACACAATTGACTGGATGGTAAAATACAAGCGAATTGTTAAAGGGAGTTTCAAAGTTGAAGAAGAAACCATTCGAGCTGCACATGTCATTATCGGTGCAGGGGCGCTTGGCTCTACCAAATTGTTACTTCGGTCAAAAGAGCGTGGGCTCAAAGTGTCAAGCCGGGTGGGACAGCGCTTCTCCACTAATGGAGATGTCCTCGGTTTCAGCTACAATGGAACCAAAAAAGTAAACTCCGTGGGGCTTACGACCGAACACATGACAGAGAATAAGAAAGCAAAACCTCCAGGTCCTTGTATAACCTCTGTTATGGATTTCCGGAAAACAACAGATGGAAACGTGAAGAACGGTTTCGTCATTGAAGATGGAACCCCACCCTCGGTTCTTTCTGGAATGTACACAGTTGGTTTGATGGCTGCTTCAAAAGAATTAAGAGGCAAAGGGATTGACAATAGTCTGTCTTGCCTGTGCATGAGTCATGACGATGCAAATGGTGTCATCACCTATAACAAAAACAACGACAGTATCGACATAACCTGGGACAGAGTTGGATATGAAAAGAACTTTATGACCGTTAATCACGCGATGGAAAAGGTCACCAAAGGACTCAAAGGGACATTTGTGAAGAACCCGACGTGGACTGCCGCTCTTGGGAAAAGTGTCGTCTCAGCACATCCTCTTGGTGGCTGTTCCATGGGGGAGTCTGGACGAACTGCCGTGGTAAATCATGCTGGACAAGTTTTTGATGGTGATTCTGACCAAGTTCTAGAAGGACTTTATGTTGTAGATGGGGCAATTCTTCCAATAGCTGTGGGTGTTAATCCCACTCTTACCATTTCCTGCCTGGCGGAGCGCTGCTTACGGCTTCTTGCTGAAAGAGAGGGATGGCAAATAGACTATGACACATTCAAGCCACTTGGTGACTTTGTCAAACAAAAGCCTGGAATTCGCTTCACAGAAAAGATGGTGGGGACATACGAATCATTAAACAACAATGCAAAGCAAACACCGTGTGAATTTACACTTACCATCGAGTCCGATGATGTAGAGAAGATGCTCAACTGCGATCCATCTCACCAGGCTAAGATAAGTGGAACAGTGACATGTCTTGCATTATCCTCTGCTCCGCTGACAGTTTCTGATGGTCACTTTCAACTATTCAGTACCAGTAAAGATCGCGTCGACACCAAGGAGATGGTTTACAAAATGACCCTCACAGGAGATGGTGGAAGGAGGTATTCCTTTGATGGTGTCAAGTACATCCACAAAGACCACTTTGGAGAGACAGGGTTGAAAGATACCACAACCTTGTTTGTTAAAATTTTCCAACTTGACAAGAAGGAGCTCTTGGGAAAAGCAACACTCTACATAACCGCGCCCAACTTTGCAAAGCAGCTGGAAACAATGGAGATCATTAATACTAACAGCAAAAGTGAGAAGCTGAAGTGGATGGCACGGTTCGGTGCGTTCTTTTCTAAAACTCTCTGGGATGTGTATGGGCCAGTTTCACGTGACAAGTACTTCAATCCCGACGCACCACCCAGGAAGAAAAGGCCTCTGAAGCTAAATGGGTGTATCCCTAAGGTCTACAGCTGCACAACGGAGGATAAGAAAGACGTTCAAGTTGTGTGCCACTGCGCTGGATCCTCGGTGTGCTTTGCTTCTCTCCTGTCCGGAGCGCTTGAGGGAAAGGTTAGGAGTGTGGTAGCCAGCCAGGTGGCTGCAAACCCCATTCCCTGCACGTTCAATAAGCTGAAAGCGGGACTGCACATTCCAGGAGTGATGGAAGCTCTCGGTATTAAGGGAATAACAGTCGACACGGATGAGCATGCTTCCTGGACTGACTGGCTCTTTGATAAATTTGTCAAAGGAGTTGATTATGTGGTCTTGCCTTATGAGGAGCTGTGTAACAACCCTGTTTGTCACAGGATAAGCTTCATTTATGGCTTGTTAATGGAGCATGAAAATCTTAATCCACTGACACATGATACTCTGCATGAGTTCTTTGGCTACATAACTTCAGAGTGCAGTGCCAATTTGGCATTGTATATGAGAGAGAAAAAGTTGGTTTCGGCTTCCGGAGAAGACATTTATTTGCCTGATATGGACAAAGAGGACCGATTGGACCGACCAGCTTACCGAGAGCATATAAATCGACTAAATATGCCAATCTGCTTTATTGTCGGAGAGAAAAACAGCTGCTATCTACCAGAAAGCACCTTTACAACTTTCAACCTTGTGAAAGAAGCACACCCGAGTCAAAAGTACACTTGGATTCAGATTCCTGAGTATGGTCATCTGGACTGCATTTATGGTCACGGATTCAATTCTGGCCCCATCGGActctcagggtcttaa

Transcript

ENSXFYT00000031532

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A4D6G3C8	Cholesterol oxidase OS=Acinetobacter baumannii OX=470 GN=choxAB PE=1 SV=1
P9WMV8	Cholesterol oxidase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=choD PE=3 SV=1
P9WMV9	Cholesterol oxidase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=choD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001062 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00732 all species →	GMC_oxred_N	GMC oxidoreductase	Domain	Interproscan
PF00890 all species →	FAD_binding_2	FAD binding domain	Family	Interproscan
PF05199 all species →	GMC_oxred_C	GMC oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000172 all species →	Domain	Glucose-methanol-choline oxidoreductase, N-terminal	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR003953 all species →	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan
IPR007867 all species →	Domain	Glucose-methanol-choline oxidoreductase, C-terminal	Interproscan
IPR052542 all species →	Family	Cholesterol Oxidase Enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47470 all species →	CHOLESTEROL OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016614 all species →	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSXFYP00000028158.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Duncanopsammia axifuga tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Duncanopsammia axifuga, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →