Gene detail

Detailed information of ENSXFYP00000029495.1 in Duncanopsammia axifuga

Genomic Location: :...
NR annotation: PFX12889.1, putative RNA-directed DNA polymerase from transposon X-element [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSXFYT00000032869

ATGAAAAAAGACTGTTCATCAAAACTATCCCTCGATTACCTCACGGTTGATGCAGCGAGGCAAATACGCTTGCATAAACCTATACCACTGCGTACACTTAGCCGGCGTTATAGTCAGCTGGGTGCGAAACTCTCCAAGCGGGATACCTCTTGCTATAGGCTCGTCCCTACTGCCCATTCGAGCTTGTACCTCAGGCCTGAAATGTCCGTCTTGATAGCTGCTTTCATTCCCATTGTTCATGATCAATGCCACAATGCCAGTAGAAATCTAAGGCTTTGTTGCTTGAATGCTCAATCTATTCGGAATAAAAGCGCTGATTTTGTTTGTTATGCATCTACATCTGGTGCTGATGTTTTTGCGATCACTGAGACCTGGTTGACAGAGAGGGATCAAGCTCAAAGAGCCGAAATCACTCTACCTGGATTTAAGCTGCTTGACCATTCAAGGGAAGGAAGGACTGGCGGAGGAATTGCGTTGTTATTCAACGACAATGTCGATGCGCGTGATATTGCTAGCGGAGAGGTTTCGTCATTTGAGTTCTCGGAATGGCTCCTCCAATATGGTTCCACTAGATTAAGGGTTATCGTTATTTATCGCACTCCTTATTCCGCTGTACACCCAGTCACCACTAATGTGTTCTTGGAAGAGTTCTCAAACTATCTGGAAACTGTGATTATGTCTTCAGAGTCTTTGTTCATCACGGGCGACTTTAACATACATGTTGATGATGTCAGAGACTCGGACGCTATACGATTTCTAGATTTACTGGCCTCCATGGGTCTAGAGCAACACGTAGATAAGCCCACTCATATTTCCGGTCACACACTGGACTTAATGATTACGCGCTGCTCGGACACTCTGATCGGCACTAAACCTCGACCAGATTATTCGTTCTCTGATCATTTCACGGTTACGTGCGATCTCATCCTGGGAAGACCAGCACCCAGAGTAAAACAAGTATTTTATAGAAGGATTAAAGGAATTGACAAAGGCAAGTTCAAGGATGATATATTACCTTCCGATCTTTTTGAGAATTGCCCACATACACTCGATGATCTAGTACATTGTTATAATAAATCTCTGGCTGATGTGCTTGATAAACATGCTCCCATGCGCAAAAAGGTCGTCAACGCGAGGCCATTAGTGCCGTGGTTCAATGAGAAGATTAAGTTGGCGAGGcgcgaaaaaagaaaagcagagcGAAAATGGAGACGCACTGGCCGTAGAGAGGACATATTGGACTATAAGGCAAAAAAGAACTATGTAAATCAGATAATGAATGATGCACGGATAACATTCTACCAAGATTTCATTGAGAAGAATAGTACTGATCAGCGTAAATTATTCATAGCTGCAAAAACTGTGCTTTATCAAGGCGACCAAAGGTCTGTCTTTCCTCCATGCGTCGACAAGTTGAGATTTGCTAACCAAATGGGACAATATTTTGTTAAGAAGATAAGGAACATTCACTCTAAGCTAGATAACTTGGCTTTCACTCTACCCATCGATCCGCATGACAGTGGCGCAGATGTGCAACCTATTGTCGCTCAGTTTAATGTTTTTACGGCACTCAGTGAGGACGATGTTCGACAGCTCATACATGACTCTAGCAAAAAATCGTGCAGTCTAGACCCGCTGCCTACATCTGTCGCGCTTGACTACGTTGATATATTGCTGCCAGCTATTACCAAGATTATTAATCTGTCTTTGACATCTGGTCAGTTTGCGGAGGAATGGAAGTGTGCTCTTATCAATCCATTATTGAAGAAATTGGGTCTTGATCTATTGTTTCCAAACTACAGGCCTGTTAGCAGCCTACAATACATCTCTAAACTGACTGAGAAAGCGGTGTTTAATCAAATGCACGCGCACATGACGACCAACGCAATTTATCCTGAATTACAGTCATCTTATCGCAGATTTCATAGCACTGAAACAGCGTTACTCAAGGTAACAAACGACATTTTGATGAAGATGAATTCCCAAGAGGTTACGCTATTGGTCACGCTGGATCTGAATGCCGCATTCGATACAGTAAATCATGACATCCTAATTAGCCGTCTACATGAGGAAGTCGGTGTTAGTGGCCTAGCTCTGGAGTGGTTTAGATCCTACCTGCAGAATAGAACACAACGTGTGGCTGTTGATGGGACGTTTTCTGAGAGGTTTGTTTTAGATCATGGAGTCCCACAGGGCTCCTGTTTGGGCCCACTGCTGTTTATCATTTACTCGTCCAAGCTCTTCAAAGTCATCAGGGATCAGTTACCAGAAGCACACTGCTACGCAGACGATACACAATTATATTTGAGTTTTAAGCCGCATAGCGACGCGTCGCAGACTGTTGCTATGAATGCTATGGAGTGTTGTATAGAGAAAATAAGGGAATGGATGATAAGAGACAAATTAATGATAAACGATAGCAAGACTGAATTTATTTTGATTGGAACTCGCCAGCAGTTAAGCAAATTACAGCCGTGCGCTATTTCAGTAGGGCACGATACAATCACCGCAAGCACGCAAGTGAAGAACCTTGGTTGCTGGCTGGACTCACATCTTAGTATGTCCAAACATGTTACTAGTGTGTGCAAATCAGCTTTTTACCATCTTCATAATATAAGACGTATAAAGAACTATCTTTCTAGGGAGAATCTTTTGACCCTAgcgaaaaacgattttgaaaaagcattgtttaaactcatgaacaattctgtgtttgggaaaaccatggaaaacgtgagaaacagagtgtcgattgaattggtgaaagatgcggaaagagccgcgaagttggtgaataaaccgaactttgaggaattgaagattttcgacgaatttttgatcgctgtgaagatgagaaaaaccaaagtctggatgaataagccggtttatgtcgggatgtcaattctggatctgtcgaaaactttgatgttttccttccagtatgaatacgtgaaaaagaagtgggagaaggcagaagttttgtattccgatacggattcgttggttttgaagattgaaaccgacgattttttcaaagatatttccggagatgttgcggaatgTTCTGGTTTATTTCCAGATGACTGGAAATGCGCTAGAGTAACTCCATTGTTTAAACAAGGTGAGCGAACTGATGTGAATAATTATCGACCAATCTCTGTTATCTCAATAATAGCTAAGGTGTTCGAGAGAATAGTGTATGATCAACTGTATAGTTTTTTGGCTAATGAAGAGATAATCACTAACCAACAATCAGGTTTCCGCTCGTTGCACTCGACTGTCACTGCTCTCTTAGAAGCGAATGACAGCTGGGCTCTCGATATAGGTCGCGGTAATGTAAATGCAGTGGTTTTCCTGGACTTAAAAAAAGCATTTGATACCGTTGATCACGATATCATGTGTGAGAAACTTAAAGCATTGGGAGTGTCAGAAGATATGTGGATATGGTTGATGGATTATTTAGCAAATAGAAGCCAATTGACACAAATAGATGGCGCATCTTCGGAATCTAAACCTGTCAAAATTGGGGTCCCTCAGGGTTCCCTGTTGGGACCTAGGCTTTTTATTACTTATGTCAATGATCTTCCAGACAGCATTAGAAGTGGCGAAGTTTACCTGTATGCTGACGACACTACCATTTATACTATTAGTAATACTACTGATGAGGTTGCTATAGCCCTCCAGGTGATATTAGATCAGCTACAAACCTGGTGCCAAAAGAATGGATTAATTATTCATGAAGGGAAATGCGATGCAAATGCTTCTTCTTATAGTCTTAGGAAATCGTTAAATGTTGTTGTATCTAGGCCAAGAACTGAACAGGGTCGTCGTTCATTTAAACACAGAGCTGCAATTGCCTGGAACTCTTTACCTGACACTATAAAACAGCTTGAAAACCCTCACTCTTTTAAAAGAAGGTTAAAATCGATCAAGACCTATGTTAGGGACATCAGTTTTAAAAAAGAATGCTCAGTAAATTATAACAAGAACCctgaatttatatatttttaa

Transcript

ENSXFYT00000032869

Protein

Uniprot

Uniprot term	Description
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
P08548	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR017964	Conserved_site	DNA-directed DNA polymerase, family B, conserved site	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan