Gene detail

Detailed information of ENSXFYP00000032004.1 in Duncanopsammia axifuga

Genomic Location: not available for this species
NR annotation: CAH3191939.1, unnamed protein product [Porites evermanni]
Species Duncanopsammia axifuga · all data for this species · gene families

Sequence

CDS

Transcript

ENSXFYT00000035791

CAGGTTTTCTCCCTCACTCTTTCAAATTAGAGGAACCAGCTATCATGGAAATCGACGAAAGCGGTGAAAATTTGTCGGCCTCCGAAACCCAAACAGAACCCAGGCCGGAAGACGAAATGAGCGCGCGTCCTTACCAAGTGGAATTGCTTGAACGCGCCAAGGAAAAAAATACAATCGTTTGTCTCGGTACTGGAACTGGTAAAACATTCATAAGTGTCATGCTTATAAAGGAACTCGCTCATCAAGTTAGAGAAACCTACAAAAACGGAGGGAAAAGAACTTTCTTCCTTGTTAATACAGTTCCTTTAGCCAGTCAGCAGGCCAAGGTGATTGAAAAACACACAGATTTAAAGGTGAAGCATTATGTCGGCGAGATGGGAGTTGACTTCTGGGACGAAAATATATGGCAAAAAGAGTTTAATGAGAACAATGTTCTTGTCATGACCGCTCAGATATTCCTTGATCTTTTGCATCATGGTTATATTAAGCTTGCACAAGTCAATCTTCTGATCTTTGATGAATGCCATCATGCTAAGAAGAATGACCCGTACAAGCAGATTATGCAGTGCTTTGATGACAGCAAAGGGGATGATTATCCAAAGGTCATGGGGCTAACAGCCTCTGTGGTGAATAAAAAAGTGAAACCATGGAATATTGAATCTGAAATACAGGAACTGGAATGCACCTTGAGGTCAACATGTAAAACCAGCCAAGATGAAGAAGTTGAGAAGTTTGCTGCAAAACCAAGGGAAAAGGTCaagacatttttaaatgttacCATTGACGACAACACAAGCatcttaattaaaaaaattcaagctgTTTTAAGTCCAGGAATGCAAATTGCACACAAGTATGCAAAGTCTGCACTAAGGAATTGCCATGAGGTATTGTTGGAGTTAGGTCCCTGGGCTGCCAATAAAGTTGCAGAGTACTTAATCAAGGATCTAGAGAGGGCATGCGTGTTTCAAGACAGCAACGAGGGGCGGTTGTTCTGCGAGTTTAGTGCAACCCAGCTGCGACAGCTACAAGGCATTTATCACAATTTTACATCTACCACTGGCAGTGAAGATCCTGGCAGCAATGGAGAGTTCTATATCTCGCCCAAACTGAAGACacttttgagtattttaaaAGAATATGGGAATTCAAAATGTAGTGAATCCGAGGAAGAGAACAAGCTCTGTGGAATAGTGTTTGTGGAAAGGAGATACACAGCTATGGTACTCAGTGAACAGATTAACACCGCTGCCAGATTAGATCATGAACTCACCTTCATCAAAAGCAAGTTTGTGATCGGACATGGAACCGGTGCAAAAGTGAATTACTCCACAGCAACAGAAATGAACTTCAAAAAACAGGAGGAAGTACTGCGACAATTCAGGAGACATGAATTCAACCTTTTGATCGCAACTTCTGTTGTGGAGGAGGGATTGGATATTCCAAAGTGTAACATGGTTTGCCGTTTTGATTTTCCAGAGAATTTCCGCTCTTATGTGCAGTCAAAGGGCAGAGCTCGTGCTAAAGATGCCTGTTACTATATCCTTGTAGATGAGGAGgagaggaaagaaaaagaaggcGAATTGAAGACGATGCGTGAAATAGAAGATTTCCTGTCAGAGATGTGTCATAACCGCGCTGAATTGACTAAAGAGGAATGCGATGATGCAGCAGATGCAGATATCTACTTAGCTCCATACAAACCAGAGAGCGGGCGAGGAGCAAGAGTCACTATGAGCAGCAGTGTCGCTCTCTTATCCAAgTACTGTTCTAAGCTGCCGGGAGACAGGTTCACGCAACCCAGACCAGTGTACAAAATAGATGAAATTGAAAGAGATTATATATGTAGACTGGAAATGCCCATTAACTGCccgctgcgcaaaactgtttctGAAGCGATGAAAAACTACTCCAAGCAGCCAGGAAGGGAGATAAGGAACTGCACAAACCAGTCAGTCGGCCAAGGGCCTTAAAGACCGAAGGAGAGCTGAACATAAGGCCGAGTGGCAAGAGAAGGTGTTGTATGGCCAGTTGCTCAGACAAACGGAGAATGAGAGCAATGAGAAAACCTGGGCATGGCTGAAAAGGGGTGAACTTAAGAGGGAAACAGAATCCCTGATCATTGCTGCTCAAGACCAGTCACTGCTAAcaaaccaaataaaaacaaaaatc

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6TV19	Endoribonuclease Dicer OS=Danio rerio OX=7955 GN=dicer1 PE=2 SV=2
A0MQH0	Endoribonuclease Dicer OS=Cricetulus griseus OX=10029 GN=DICER1 PE=2 SV=3
A0A974H8H3	Endoribonuclease Dicer-L OS=Xenopus laevis OX=8355 GN=dicer1.L PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001530 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF03368 all species →	Dicer_dimer	Dicer dimerisation domain	Domain	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF20930 all species →	Dicer_PBD	Dicer, partner-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR005034 all species →	Domain	Dicer dimerisation domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR038248 all species →	Homologous_superfamily	Dicer dimerisation domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR048513 all species →	Domain	Dicer, partner-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15271	HFM1, MER3; ATP-dependent DNA helicase HFM1/MER3	EC:5.6.2.4	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.