Gene detail

Detailed information of ENSXFYP00000037207.1 in Duncanopsammia axifuga

Genomic Location: :...
NR annotation: KAJ7390027.1, mitochondrial large ribosomal subunit assembly [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSXFYT00000041426

atggcgcacTCCAGAGGATTTCATCGGCCAAGAGGCAATAATAATTTTCCGCAGCGATTTCCACCTTTTCAAGGAAGGCCTCACCCATTAATGAACCATCCACCTCTAGCCGGCGTCGGTGGTGGGCCCCGTGTACCATTTTCGTCTGATTTTGTTATCGGCGGCGGTTCTCTTCAAGACTTGAGACCTCCGAAAAAAGCGCCGACAACTCGCCAAAACACGACTGTAAAAAAACCTGCTCACATTTGTGTCGGCTTTGAAGCCTCGCAGAGGTTTCCTAACGCGAAGGAACGGCTGCACAATGTTATTCAAGGTGCTATGAAAGGAAATTCATTGAGGTTTGAATGCAAAGAAGGCGATAAATTTTGGAAAGCTACTGTTTGCATTCCATGGCCGCGGGAAATGTCCTTTTATGGTGAAGGGCCCTCGAGAAAAGAGGCAGAGAAGAACGTGGCAGCAATTGCTTGTGTTGAGCTGGAGAGACTTGGAGTGGTAAATGTAAGTTCAGCAACTGTCTTAAAGAAAGAAGCTGTTGAGAGCAAGGATGAACCAAAGTGGATTTATATTGATGATGATCGTTTGGCTAAGGTGGAAGCATTTTTACTGAAGAATTCTGTTCTTAGCCAACAACTCTACAGAAATCAAAACCAACAACCCACAGTTCAGCTGCAGCCATTGCCAGCATCTGGAGGATCATCAGCATTAAAAGCTAATGTTCCTGAGAGTGGCGTGTCAagtcaacaacaaactcaaacaagcaATGTTGATGCAGACAAAAACAGAGATGCCAAGGTACCAGAATTCTGGCAAGATTCTGAAGTTCAAGAGGCAGATTTTTCTAACTGGGAGATTGGGTTAGCTTGGCAAGTTGAATCGGAAAAAGAGCAGGGTAAACTAAATGAACAGTTGTTAGAAGAGTACAAACAAAGACAGAGGATGTTGGAGTCCAGAAATTTGTGGCTcagtaaagaaacaaaaaagttgCCTGTTGCAAGCTACAGagaAAAGATTGTTGATTTGATTGAAGCAAATAAGGTGGCTGTTTTATCAGGAGAAACAGGATGTGGCAAAACCACTCAGGTAAGAAAAAATGTGTATGACAGGCCCCGCCGTGTAGTAGCAATGTCAATTGCAGAGAGAGTCGCCTGGGAAAGAGGAGAGGTCCTGGGTAAGAGTGTTGGATACCAGGTGAGGTTAGAGGGCACACCCCCAACACAGCAGGGGCGAATATTATTTTGTACTACTGGAATACTCCTGAGACGGATGCAGAATAACGTGCTTCTACAAGGTGTCAGTCACGTTATTGTTGATGAGGTACACGAACGAGATATCAATACAGACTTCCTGCTAATCCTACTGAAAGAATTACTTGAAAAGAACCAGCCACTGAAGATTATTGTGATGAGCGCAACAGTTAATTCAGAAAGATTCTCGGAGTATTTTTACGGCAGCTGTCCTAGTTTGAACATTCCAGGATTTACTCACTCTGTAACAGAGTATTTTCTGCCTGATATCCATCGGATGTTGGGTGGAATGTCCTCGGCTTCAGGGCCATCACAGAACAAAAGATTCAAGGCAAACAACAATTCTGTTCAAAGTGACGCAGAAAACCCAGAAGCAGACGCTGAACTTGTCAGTGAAACAATTCTGCATGTCTGCAGGAATTATCCAgagGGAGCTATTTTGTGTTTTCTATCTGGCTGGGATGAAATAACTCTTGTCCATGATATTTTGACATCCAAAATAAGTGATGTTTATaaatcccaattcCTTGTTCTACCACTTCATTCCATGCTTCCGATGTTTAACCAGAGAACAGTGTTTGAAAGGCCTTCTGTTGGAGTTCGCAAGATTGTATTAGCCACCAATATAGCAGAGACATCAATAACTATTGATGATGTAGTTTATGTGATAAACGCTGGTAATGAGAAGGAGCGGATGTATGATACAACCAACAAGGTTTCCTGTTTAATGACTACCTGGACGTCCCAATCCAGTGTGGTACAAAGGCGTGGCAGAGCGGGGCGGTGCAAACCTGGCTTATGCTTCAATCTCTTTACAAAGGAACAGTTTGAAAACATGGGTAGGTCACTTTGGCAGCAACAGTGCACTTCAAGTTATTTGTTCTGTGATCTAAGATACCTGAAACTTATTCAGTGCACGGATCAGACTTGTAAGGTGAAGGTCTTTCTGTCCAAGGCTCTGGACCCTCCATCTCCAGCCGCCGGTAAGAACAACTTTCGGAAAGCGCTTGAAGATCTTACAGTCCTTGGAAAACACATGGCGTACTTACCAGTGGAACCACGGATAGCGAAAATGATTATATACGGGACAATCTTCAGATGCCTCGACCCAGTGCTAACAATCGCCGCAGGTCTCAGTTACAAAGATCCGTTTGTGACACCGCTCAACTGCCGGGCACAGGCCGACCAGTCTCGAAAAACCTTTGCAAATGGCAGCAGGAGTGATCACGTGGCGTTACTGAACGCTTACAGTGGATGGATGGAAGCCATGAGCCAGTCGCGGGGAAGAGAGTTTGTTGAACAGCGGTTTCTTCATTGGGGCACGCTCAATATGATACGCGgtATGCGTGATCAATTTATCCGGCTGCTAGAGGTCTCGGGCCTAGTTCCCAGCTTCGACAGTGGTCACACGGTCAATGCCTTCAGTGGAAATCTGGAACTAGTTAAGGCCATTTTATGCGCGGGACTTTTTCCTAATGCTGTGAAAGTGGGTCTTGGTATAGAATCAAAAGGAAGATGTGGAAAAAAGCGAGTCAGGGTCGCTTTCCGAACCAAATCTGATGGACGAGTAGCATTACATCCTTCATCGGTCAACTCTGACGAGAGACAGTTTGGCAGCCAGTGGCTCGTTTATCACGAcaaaGTGAAGTCAACGCAGGTTTTCATCCGGGACAGCAGCATGGTGCACCCAGTGGCTTTGATTTGCTTATCTGGAAAGGACGTCAGACAAATACGCCCCGCCCCGCCACCTCAGCAGCCTCGAGTGACCCTCGCTGTGGATGGAGACCGTTGGATGGCATTTCACTGTTCATCAAGACTGGCTCGAGTACTGCAGGCGATCAGAGAAGAGATTAACAAGATGGTGTCATGCAGCATATCACCCGCGGCAACAAAAAATGCATTATTTCACCATCATACACAGCTCATTGAGGCCATCAGCTTGTTGCTGACATTACCAATCCAAGAACCCCTCACCAGCCTTAACTGA

Transcript

ENSXFYT00000041426

Protein

Uniprot

Uniprot term	Description
F4ILR7	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana OX=3702 GN=At2g35920 PE=2 SV=1
Q9H2U1	ATP-dependent DNA/RNA helicase DHX36 OS=Homo sapiens OX=9606 GN=DHX36 PE=1 SV=2
D4A2Z8	ATP-dependent DNA/RNA helicase DHX36 OS=Rattus norvegicus OX=10116 GN=Dhx36 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21010	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF07717	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR007502	Domain	Helicase-associated domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011709	Domain	DEAD-box helicase, OB fold	Interproscan
IPR002464	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005622	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14442	DHX36, RHAU; ATP-dependent RNA helicase DHX36	EC:5.6.2.6	Translation factors	ko03012	deepkoala