Gene detail

Detailed information of ENSXFYP00000039727.1 in Duncanopsammia axifuga

Genomic Location: :...
NR annotation: XP_027040348.1, DNA mismatch repair protein Msh2-like [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSXFYT00000044176

AGCTTATTACTTAAATTTTATGGTACATTTGCAGATGGAGCGGCAGAGCAAGGATTTCTTGCGTTTTATCGATCTTTACCTGAGGTACGAAAGCTTATAAATTTTTGCCACTTCCATTTACAGGACTATTATACTGTTCATGGCCCTGATGCAATGTttgctgccaaagaggttttcaAGACAACAAGTGTTATTAAACATCTTGGTTCAGGAGATAGGAAGGTTCCATCTGTTATTTTGAGTAAAATGAATTTTGAGAGCACAGTACGAGACCTCTTGCTGGTACGTCAGTACAGAATAGAAATGTATCGTGCAAGCAAAGGAGCAAAGAATACTTCAGCTTGGGAACTTGTTGCAAAGGCTTCACCTGGAAATTTACAGCAATTTGAAGATGTCCTTTTTGGAAACAATGATATGTCAGTATCAGCAGTTGTCATGGCAATCAAACTTGGTACAGAGAATGGTCAAAGGGTTGTGGGTGCCTCATATGCAGATTCTGCTGCAAGTAAGCTGGGAGTTTGTGAATTTGTGGACAATGATCAGTTTTCCAATCTGGAgGCTCTGTTGGTCCAACTTAGTCCAAAGGAGTGTTTGTTACCCCAACATGACACAAGTGCTGATGCAGCAAAAGTGCAAGAAGTGATTCAACGGAGTAACGTTCTTATTACCGAGAGGAAAAAAGCTGAGTTTTCCAACAAAGATATTGTGCAGGATCTCAACAGGCTTTTGAAGATGAGTGCATCAGGAAACAGTGCAACACTATCTGAAATGGATTTGACTCATGCCACAGCTGCTTTGGCATCATTGATCAAATACTTGGAGTTTCTTGCAGATGAAACAAACTTTGGCCAGTTTCACCTGAGTACATTTGACCTGACACAGTTTATGAAGCTCGATGCTGCTGCTGTTAGGGCTTTGAATCTTCTTCCAAATTCTTTAGATGGAGGGAATAAGAGTATGTGCCTGATTGGCCTTTTAAATAAGTGCAAGACAGCCCAGGGCCAGAGATTGGTGGCGCAGTGGGTGAAACAGCCTTtgatggacaaaaacaaaatagAAGAAAGACTTGACATAGTTGAAGTATTTTTTGAAGACACAGAACTAAGGCAGACAATACAGGAAGAGCTACGCAAAATCCCTGATTTTTCTAGATTAGCCAAGAAGTTTCAACGACAGAAAGCAAATCTGCAGGATTGTGTTAGAGTCTACCAAGCTCTTCACAGACTTCCATCCTTCATTGGCATTCTTGCAGGCTATCAAGGAAGTCACCATGAGCTTATACGTGACTGCTTTACAACTCCTGTTAAGGACCTTTTGGAGGACTTCCAGAAGTTTACTGAGTTGGTCGAGACAACAGTAGACCTTGAACAAGTCGAGAATCATGAATACTTGATCAAAGCTTCTTTTGATGAAGGATTGCAAGAATGTAGAGAAAAGATGGATGAGATTTTGGAGCAGATACCAGTTGAGCTGAACAAGGCTGCCAGGGATTTAGGCCTTGAAGCaggaaaatcaataaaattggaaaccAATAACCAGTTTGGTTATTTCTTTAGGATAACAAAAAAGGAAGAAAAAGCACTTAGAAACAACAAGCGCTACACCACAATAGACACCAGGAAAGATGGCATAAGATTCAACAATTCTATTTTGCGGCAACTGAATGAGCAGTTTCAATCATACAAAGAGACGTACAATGATGTACAAAGTAAACTAGCTAATGAAGTGATCAAGGTCGCTGgagGTTACAGTGAACCCATGCAAATGTTAAGTGATATCATTGCACAAATGGATGCCTTGATAAGttttgcacaTGTGTCTGCAAATGCACCTATTCCATATGTTCGTCCTAAAATAACTCCTAAAGGAGAGGGACATATGAAGCTAGACAGTGCGAGACATCCCTGTCTTGAAGTTCAAGATGATGTGGCCTTCATTTCCAATGATATAACACTGGAACGAGgtgaaaaagaatttttaatcATCACTGGTCCTAACATGGGTGGCAAGTCCACGTACATCAGACAGACAGGAGTAATAGTACTTATGGCTCAACTTGGCTGCTTTGTGCCGTGTAACTCTGCAGAAATCTCAATCACTGACTGCATTTTAGCACGAGTGGGGTCTGGGGATAGCCAGTTGAAAGGCGTCTCCACTTTCATGTCAGAAATGCTGGAAACGGCTTCAATATTGAggTCTGCTACAGAGAATTCTCTCATCATTATTGATGAATTGGGAAGAGGCACCTCAACGTATGACGGCTTTGGACTTGCCTGGGCAATATCACAGTATATCGCTACTAAGATCCAATGTTTCTGTCTGTTTGCAACTCATTTCCACGAGCTCACAGCCCTTGCGGACGAGGTTTCCACGGTTACTAATCTACATGTGACAGCTATGACCTCCAGTGGGACTCTGACTCTGCTATATAAAGTAAAGCCCGGTGTGTGTGATCAGAGCTTTGGTATTCATGTTGCAGAACTAGCGCACTTCCCAGCAAGTGTCATAGACttTGCCAGACAAAAAGCTGTAGAATTGGAAGATTTTCAGGGTAGCACTGCACCGTTGGGGGAAGGAGACGGCGAAGAAATCATCAAAGATTTTCTTTGCCAAGTTGCAAAGTTACCAGTGGAAACCATGACAGACGACCAGACGGCCCGTGAAGTatcaaaattaaaggaaaaagtCATCGCAAGAAACAATCCTTACATTCAAGAACTTTTGGCCAAATAA

Transcript

ENSXFYT00000044176

Protein

Uniprot

Uniprot term	Description
Q5XXB5	DNA mismatch repair protein Msh2 OS=Chlorocebus aethiops OX=9534 GN=MSH2 PE=2 SV=1
Q3MHE4	DNA mismatch repair protein Msh2 OS=Bos taurus OX=9913 GN=MSH2 PE=2 SV=1
P43246	DNA mismatch repair protein Msh2 OS=Homo sapiens OX=9606 GN=MSH2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05192	MutS_III	MutS domain III	Domain	Interproscan
PF00488	MutS_V	MutS domain V	Domain	Interproscan
PF05188	MutS_II	MutS domain II	Domain	Interproscan
PF05190	MutS_IV	MutS family domain IV	Domain	Interproscan
PF01624	MutS_I	MutS domain I	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007696	Domain	DNA mismatch repair protein MutS, core	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000432	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR032642	Domain	DNA mismatch repair protein Msh2, ATP-binding cassette domain	Interproscan
IPR011184	Family	DNA mismatch repair Msh2-type	Interproscan
IPR045076	Family	DNA mismatch repair MutS family	Interproscan
IPR016151	Homologous_superfamily	DNA mismatch repair protein MutS, N-terminal	Interproscan
IPR036187	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR007860	Domain	DNA mismatch repair protein MutS, connector domain	Interproscan
IPR036678	Homologous_superfamily	MutS, connector domain superfamily	Interproscan
IPR007861	Domain	DNA mismatch repair protein MutS, clamp	Interproscan
IPR007695	Domain	DNA mismatch repair protein MutS-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0030983	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006312	Biological Process	mitotic recombination	Interproscan
GO:0032301	Cellular Component	MutSalpha complex	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08735	MSH2; DNA mismatch repair protein MSH2	-	DNA repair and recombination proteins	ko03400	deepkoala