Gene detail

Detailed information of ENSXFYP00000040751.1 in Duncanopsammia axifuga

Genomic Location: :...
NR annotation: CAH3039123.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSXFYT00000045397

ATGCAGATTAAAAGCGTGGAAGCCTTGAAGTCCTGGCTAACAACTCGTTTGGAGTCAGTCTGTGATGCTGATCCAGCTGCGCTGGCCAAGTATGTTGTTGCTTTGGTGAAAAAGGATAAGCCCGTGGAGGAACTGAAGGACATTTGTGTTGACCAGTTAGAAGTTTTCCTTTCTGATGAAACTGCCAACTTTGTAAATGTGCTGTTTGATGCCCTGACAAACTCTTCATACATACCTCAGTCACTGATCGAGGTACCTGTCACGCCAGTAGTCCCTGTTCCTACCCCTCAATTAGTACTTCCTCCCCAGCCAATGCCCAATTCTACAACACCGCAGGAAAAACCAAGGAAAGTATCATTATCAGAGGACGTTTTAACCACACGAGTCCTGGCAGAGCCTGATGACGATGACAGAGATTTCAAACGAACAAGAAGGACAACAGAGTCTAGTGATCGCAGCACTAGTGGAGGAAGCTCAGTAGTGTCAAGCAGTGGTGACAGATCTCGCAAACGAAGAGCTGATGATGATAGAAGCAGAGGTGACCTCCCAAAGATTCCTAAAGAGGAACATGGTGGGTTGAGAAGAGGAGATTCAGAGCCCAGAGACGATCAGGTCCCTAGAATTAAGCCTGATGTCCCACCTTTTGACAACGCAACGTACCCCATTCCCAGCGCGATGCATCGGGATAGAGGTATCAAGCAGGGTCCAGATGGTCAGGACATGCGGCCTGGTTTGCACTCTCATGACGATTCCAGAGGAAGACGTGGGAGCCCACTCAGGGATCGCAGAGGTGGAAGGATGGGACGGGGGCGTATTTTCCGTGACCGTGACCGACTTAGAGATGACCGACCACGACACGATAGAAGAGATGATAGAGAGAGGCCTGGAGCTAGGAAGTCTCGCTGCCGAGACTATGATGAAAAAGGTTTCTGTATGCGAGGGGAGCTGTGTCCTTTTGACCATGGAAATGATCCAGTGGTAGTACAAGATATGCTGCCTCCTGGGATGTTAGGATTCCCTCCTTCCACAGGACCTCCCTTCCTCCCAGATGGCCAACCTATCCCTGGGCCAACACTACCAGGGAATGCTGGCCCTATCCCAGGGAGTTATCCCACTCCAAACTCCCAGCCTCCTCCACCTGGGACTACTGGGACGTTATCTAATGATGATCCAAAGTCCAAAACAGCACAGGAAGGGCCTGATACACCTGTACCTGTGAGTGGCCCAAGACCCTCAGCCCCAGCTGTGATGGTACCTCCGCACAGTCAAGCACCTGTCATGCCACCACATGCAGTTCATATGATACAGCAACCAATGTTAAGGGGACAGGCACCCCACCCTCCATTTGGGAATCCGTTTGAAGATTCCTACAATCCAGAACAGCCTCAGTTTGACAGGACTCCTGTATGGATGCGGCTTGGTAATGGCCGTCCTCCccaaccccacccccctcctccTCGTGGGGTGCCTCGTGGGGTGTTCCACCCTACTATGGGTTTGCGATCAAGGGAACTGTTAGCCCTTACGCCTAGCCCTGCTCAACTAACTGTACAAGTTCGAGGTATTTCAGCACCGCCTCCAGCAGTACCTACCATGCCTGACAGAATAGTCATCCAACACCCTAATGCAACAAAGAACACCCCTGTACCTCCCCAAGAGCAGCTTCCCCCTCAACAGCCTCCCCCGTCCGTCCCCGAACAGGGCGTGGCACAAGCTCTAAGTTCTGTAAATCACACCCCTCCCGTCAAGAGTAGACTTGGCTTTCCAAAGAAATTCAGTGATACAttggagttgaaaaagattccacGTGACTTAAACAACATTGCCAAGTTGAATGAAcactttcaaagatttggttctATCACCAACATTCAGGTCTGTGCCTTTGGAGATCCTGAAGCTGCCTTAGTTCAGTTCTCACATCACACGGAGGCTAAAGCAGCTTATTCCTGTCCTGATGCCGTCCTTGGTAACCGCTTTATTCGGGTGTTTTGGCACAATCCTGACAGGCAACAAAACAATAAAGATGGAAATTCAAATCAAGGAGCTGCAGCTAGTGACAATAACGCAGAATCAACTACCACAGAGTCAACAGCGAAAGAAGATCCCAACAAGGCCCCTGCTGAACCCAAAGCTAAACCGACCATGTTCCAAAGTGGGAAGACAACATTCTCAAAGGCTTCAAAAGCTGTTCCTGTTAATGCACCAGCTGGCCCTACAATGACCAAGAGACAACAAGAGCTTCACAAGCAGGAAGCAATAAAAAAGAAGCTTGAgattcagaaacagaaacaagaacTCCTAAACAAGCAAATCAAAGAACAAAAGcttttaatttCTAAACTTGAAAAGAAGAATCTAAGTGCTGCAGAGAAAGACTTGATAATGAAGACTATAAAATCTTTAAGTTCAAACATTGAGGCCTTAAAGAAAGAAGTTGAGTTGGCAGCCATGGCAGCAAAGTCTAAGGAGAGTCCCACACAGGCCAGACAGATTGCACAGAAAGCAATCCTTGACCAAGAGCTTGATCTCATTACACATCAAAACACTGGTGAAGACACAacagaattaaagaaaaaagttgaAGAACTTAAGCAAGAGGCAAAATCTCTTGGCTTATTGGATCCACCTACAAGGGGACGAGGAAGAGGAGTTGCAAGAGGACGGAGCAGGGGGACACCAGTAAGAAGCAGACCTCTTCCGAGAACAACACGGGTATGGACAAGAGATAGTGCATCCCTGGATCACCGGACAAGACAGATCATTGTGGGAGAGATAACGACAGAACAGAAGGAGGATATATCAGAACATTTTAAAGAATTTGGTATAGTTGACAGTGAAGAATATACCGAGGACAAGCAAGCTCTCAACTTGACTTTTAGGACAAGGAAAGAAGCAGAAATTGCATACAATAAGGGCAAAACATTCAAAGGCAGAGTTCTCAAGGTTTCCTGGTCCCGCCCTCCAGTCGCCCCTGCATCCCCAGCGACAGCAGTGCCAACCACACCTACAACTCCCACAGTGCTAAAGAAAGTAGAGGAAGAGTTAGGATTGGATATCGAAGCTGAACTGaacacaaaggaaagaaGTACTGTTAGGAAGGTTTGa

Transcript

ENSXFYT00000045397

Protein

Uniprot

Uniprot term	Description
Q5T8P6	RNA-binding protein 26 OS=Homo sapiens OX=9606 GN=RBM26 PE=1 SV=3
Q6NZN0	RNA-binding protein 26 OS=Mus musculus OX=10090 GN=Rbm26 PE=1 SV=2
Q2T9I5	RNA-binding protein 26 OS=Xenopus laevis OX=8355 GN=rbm26 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01480	PWI	PWI domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR045137	Family	RNA-binding protein 26/27	Interproscan
IPR002483	Domain	PWI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14398	RNA RECOGNITION RRM/RNP DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13192	RBM26; RNA-binding protein 26	-	Spliceosome	ko03041	deepkoala