Gene detail

Detailed information of ENSXFYP00000046640.1 in Duncanopsammia axifuga

Genomic Location: :...
NR annotation: KAJ7392982.1, U12 snRNA binding [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSXFYT00000052156

CTGTCATAATGGTTAGTGACAGCTTAATCAGCTTAGCAAAACTTATTatgatttcaaacaattttcagTAAGTGGAAGACCATTCAAACCTGATCCAACCTCGTATGAAGAAACTGGAATTCCATGTGGAAATCCAGCTAGATATCAAAGTCGTGGAGTGATTCGCATGAACAGGGGGGACACTAGGCCATTTGAGGATCAGCAGCTTGGTGTCCCAGGGACTGGAACTGAGTCTGAAGCTGATCAACACTTAAAAGGCATGGTAAAGAATCAACTCGATACAAAAATTACTTTGGAAAGCCAGCTTATTCAAAAGAAATCATTTCAATCATCTTCCACTTATGCTCCGTTCTGTCCTGATAAAACTGGTGCCCTGAGCTTAAAAGATTACCAGTCTATACAGAACCATGAACTGTATGTGCAGTCTCTTAAGGATTGTGGCTTTAATGAAGAGGAAATTCAGTTCAAACTTGAACAAGAGGGCCATGTTCCAAAGGCTCCAAAGAGAGGCCGGTATGGAGCAAACCCTGCAGCTGAACAAGAAAAGCTGAATGACCTTGAAAAAAGAATAAAGATGCGAGAAGAAGCATTAACTGCCCCTGATTTGTATTCCAATGTGCGAGTTCTGAGCAGGCATGCCTTAGAGGTGGAACAATCACTGCAGAAAGGAACACCAAAGGGGAGTAGTTTAAGCCACTTGGTCCAGCCAAGACAACAAGCCATGCCGATAAATGACCCACTTCTGCAAACACTGCTGGAACAAGACAAGATCTTGTCAAAATCAAAACTGGGACTCGCATCTTCTACCTATAACAACCAAGAGAAATCCAGAGACGTTCACAGTGGACATTCATCTGAAGCACATGACAATTGCAAGAAAGCTTCTGTGGACGGAGGAAAACTAAATGAAGATGGTGTAAACCCGAGTAGTTGGTCCAAAAAGGAGAGTGGAGTTAGCCTGCCAACTAATATCCAGCCTATCGACAAAGAGGAAATTATCCAAAATAGATTGTCACTGgaacaaattaaagaaattccAAAATTTGTGAATTATCAACCTGGAGAGCCTAACAAGGTGCTTTTTATCAAGAACCTTCATCACAAGACAACAGAGGCAGACTTAGTCTCTTTGTTTATAAGATTCCAGGAGAAAGAGGGGCCTAGAATATCTTTCAGGCTGATGAAAGGAAAGATGAATGGGCAAGCCTTTATAACCTTGCCAGATATCGCCTCAGCAACTGCCGCGTTGAACCTTGTGAATGGCTACTTGTTTAAAGGTAAACCCCTCATAATTCAATACGGCAAACAGAAGAAGGAACCTTCAGAACAAAGCGACACGACATTGAATGCGTCCATTGAAGACAGGCACGTAGCTAGAGGTGAGTTTTGTTCTATCGTTTACACCAAAAgaacttatttttattttaaaagcacTTTATTTTTTAGCGCGGAACATATTCAAAATAGATTCGCTAAATCTTACCGTCtcttgttgcattctttgcatgAAACAGCTTTCAATTTTACAATTCTTGTTGCATTCTTTCAAACAAGCGTCCCTTGTTGCATTATTTCAAACAAATCACTTGTAATACTGAGGCACATAACCTATCCTTTTATCCAAGAACTATAATCCAATGGAACTCTCCCCTAAATAGTGCATTTTCGCCGGCCTAAGGTAATGTTGTAATGTTTAAACTCCAAATTTCCACGCTTGTAATTCCTTAAGCTGCTGACTACCCGGCCAATAATCCTCGCCTTTAAAGGAATGGGAGTACTTTGGAAATAATATTAAATCTCCTAGCTTTATACAAACTCTACTTGCAGTAAAATTCCGCCCTGGcacttataaaaaaatatatatttaatgaGCACACTGTAGAGTTATCTTTTACAACCGTATCACAACTACATAGtactaatattaaataaatcttCACGGATTCTTGTTGGATCCAGTAGCCATAAACTCGAGTTTACAAAAGGGCATTTAAACTCCACTGAAGTTCTACTGTATAGTAACTTTATAGTAGTAGAGATTCTATTCGATAAACTCTTTATATCCGAATCCTAAAAAGTTCAAACCCATAGTTACTTTATAATTTGTTAGTTTGTAGTTACGCGTTAATCCTTTCAAAATTGAAGGGTAAAATCCCACAAGTTTTATGTTATAAAATACTGGAGACCAAACAGTGCTATAGAAAAGTATT

Protein

Uniprot

Uniprot term	Description
Q96IZ5	RNA-binding protein 41 OS=Homo sapiens OX=9606 GN=RBM41 PE=1 SV=2
Q8JZV4	RNA-binding protein 41 OS=Mus musculus OX=10090 GN=Rbm41 PE=2 SV=1
Q8RWV8	U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP65 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR045164	Family	RNA-binding region-containing protein RBM41/RNPC3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16105	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005689	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0030626	Molecular Function	U12 snRNA binding	Interproscan
GO:0097157	Molecular Function	pre-mRNA intronic binding	Interproscan