Detailed information of ENSXFYP00000047326.1 in Duncanopsammia axifuga

Genomic Location: chr8:11710979...11767371
NR annotation: CAH3039822.1, unnamed protein product [Pocillopora meandrina]
Species Duncanopsammia axifuga · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9BYK83'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7
E9QAM53'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1
P42694Probable helicase with zinc finger domain OS=Homo sapiens OX=9606 GN=HELZ PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000665 (this species only) · gene tree & orthology
Transcription factor familyzf-CCCH · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00773
all species →
RNBRNB domainDomainInterproscan
PF13086
all species →
AAA_11AAA domainDomainInterproscan
PF13087
all species →
AAA_12AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001900
all species →
DomainRibonuclease II/RInterproscan
IPR011990
all species →
Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR000571
all species →
DomainZinc finger, CCCH-typeInterproscan
IPR019734
all species →
RepeatTetratricopeptide repeatInterproscan
IPR012340
all species →
Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR047187
all species →
DomainUpf1-like, C-terminal helicase domainInterproscan
IPR041677
all species →
DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR050534
all species →
FamilyCoronaviruses polyprotein 1abInterproscan
IPR036855
all species →
Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR041679
all species →
DomainDNA2/NAM7 helicase-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43788
all species →
DNA2/NAM7 HELICASE FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0004540
all species →
Molecular FunctionRNA nuclease activityInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0046872
all species →
Molecular Functionmetal ion bindingInterproscan
GO:0004386
all species →
Molecular Functionhelicase activityInterproscan
GO:0043139
all species →
Molecular Function5'-3' DNA helicase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25165HELZ2; 3'-5' exoribonuclease HELZ2EC:3.1.13.1
EC:5.6.2.6
Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Duncanopsammia axifuga tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Duncanopsammia axifuga, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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