Gene detail

Detailed information of ENSXLYP00000002594.1 in Pelagia noctiluca

Genomic Location: :...
NR annotation: KRX17894.1, Transposon Ty3-I Gag-Pol polyprotein [Trichinella nelsoni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSXLYT00000002736

ATGGCTACGTTTGGGAAATTATCAGAGTTTGATGCGTCAAAAGAAGACTGGCAAAGCTATGTTGAGAGGTTAGATTTCTTTTTCGAGGCAAACAATATTGAGAATGTGTCTCAGAAACGTGCAATATTGTTGAGTTCGTGTGGGGCCTCATGCTACAAACTATTTCGTGGACTAGTGCAACCAGCTAAACCAGGTGACAAATCGTTTACTGAGTTGGTGCAGTTAATGCTTGACCACAGGCGTCCAAAACCAAACCCGATTGCTGAGCGTTTTAGATTCAATTTACGCAATAGACTACCTGATGAATCCATTGCTGACTATGTTGCAGAACTCAGGAGATTGACTGAATATTGTGAGTTTGGGCAGGCTCTTTCTGATATGTTAAGAGATCGTCTTGTTTGTGGTATAAATCATGAAAGAATTCAGCAAAAGCTTCTCAGCGAAGGGGCAGGTCTCACATTGGACAAGGCAATTCTAATTTCGCAATCCATGGAGTCTGCCATTGTGCAATCAACCGAAATCCGCAGCTTTCAACAAAAAATTGGAATATCCATTGCTGGTGCTCCTGGTACGGAATCTGTGAATCGAGTTTCTTCTGTGGGGGATAAAAGCCGCGGAGGTTGTTTTCGGTGCGGGAATTCGCACGATGCACAGACATGTCCTTTTAAAGACAAAGAGTGCTTCTTTTGTCATAATCGGGGGCATACCGCTCGGAAATGCCGAaagaaagctgcaaaagaggGGGTGAAGGATAATCGTACAGTGAAGACTTTGGCTGCGTCGGAAGTAGTTGAGGCCAAAAGTGAAGGAGGGAATGATGAGTATCCATTCTATCAATTGTACAAAATTGGGCTTTCTAAAGAAGATCCTATAATCGTAAATTTGTCTGTTAACCAACATCCTCTCAGCATGGAACTAGATACAGGGGCATCGGTGACCGTGATGAGCAAAGATATTTTTTTGGACACTTTCGGTTCACACATGAAAATTGAACCCATTACAGCAAAACTAACCACGTACTCAGGAGATGTGATCAATCCGATCGGTGCTGCAGAGGTTCAGGTTCAGTATGGTGACCAACAGTACATGCTTCCGCTTGTCATTACTCCTAATAATGGTCCCACATTACTGGGGAGGAATTGGCTGTACAAGATAAGACTAGACTGGGTTTCACTATTCAACAAACAACCAATAGTTAACTCCGTCAAGCTAGATGAGAATTTAGAAAGCCTCCTCAATAAGTATGCAGAGGTGTTTGCTCCAGAACTTGGTACACTGAAGGACATGAAAGTACGCATACCCCTGAATCCGGGTGCTAAACCAAAATTCTTCAAGGCTAGAACAGTACCCTATGCCTTAAAGGATAAAATTGAGAAAGAACTTGATCGAATGGTGAAAAGTGGAGTATACGAGCCGGTGGAGTACTCAAGTTGGGCTACACCAATAGTTCCTGTGCCAAAACCGGATGGTACCATTCGTGTGTGTGGTGATTACAAGTTGACAGTCAATCAAGCAGCAGAGGTTGACAGTTACCCAGTTCCGAAAGCGGAAGATCTGCTGGCGACACTAAATGGCGGAAAACTGTTTTGTAAGCTCGATTTGAAGCACGCTTATCAACAATTGCTCCTAGATGATGCCTCAAAGGAGTGCCTAACCATCAACACGCATCGTGGTTTGTTTCAACCTACTCGCCTGCAGTTCGGAGTTCATTCAGCTACCGGAATTTTTCAGAGGGAAATGGAAAAACGCTTGAGTCATGTTCCAAAATTAGTTGTGCGCATTGATGATATATTGCTTGCAGGCACTGATCAAACAGAGTTACTCCTTAATCTAGAGAAAACGTTAATGGTGCTCCGGAACTGTGGACTCCGATTGAGGAAGGAGAAATGTGTCTTCCTGGCATCGGAGGTAGTGTTTTTGGGTTTCCTAATAGACAGTCAAGGGGTACGCCCAATCGAATCAAAATTGAAGCCTATTCTGGATCTGCCCATACCTCAAGACGTGACACAGCTGAAATCATTCTTGGGAATGTTGAACTATTATCATCGACACTTGCCCAATTTGGCTGACTTGTTAGAGCCTTTACATCAATTATTGCGTAAGGGTATGTCATGGAAATGGGGAGAACGTCAAGAGGCGGCATTTGCCAagtcgaaagaactgttgtgtaGTTCCTCCTTGTTAACACATTACGATCCGCAGAAACCATTGATGGTCTCATGTGACGCTTCCCCATATGGAGTGGGTGCTGTTTTGGCCCATGTATACCCTGATGGCTCGGAGAAGCCAATAGCATATGCATCACGCACATTGTCATCTGCTGAGAGAAAGTATGCTCAGATTGAAAAGGAAGGTCTCGCGGTGGTTTTTGCCGTCCGTAAATTTCATCAGTATTTGTATGGCAGGGAATTTACCATTTATACTGATCACAAACCGCTGCTTGGATTGATCGGCGAGGAGAAAGCTATACCACCTTTGGCAGCTGCCCGAATCCAAAGGTGGGCACTACTGTTATCTGCATACCAGTACAAGTTAAGGTATCGGGCCGGAGATTCTAACTCAAATGCTGACTGCATGAGCCGCTTACCTCAACCATTAAATGAATCATCGCGGGGGGAGAACGAGATATTCCTCACAGAATTGGCGCATTCACCAGTCACCTCCAAGGATGTTAAGGAAGCCACACAGAAAGATACCGTGTTGAGCCGTGTGTTGGACTTTGTACTTCAAAGCTGGCCGCAGAATTGGTCACTAGGTGATGATTTCAAGCCGTTTGCGGTTCGACAGCATGAACTTTCTGCCGAAGCAGGCTGCCTGCTATGGGGAAGTCGCGTAATCATTCCTGACCGACTTCGCCAATCCGTGTTAGAGGAACTTCACGAAGCCCACCTCGGGGTGACGAGAATGAAAGCCCTTGCCAGAAGTTACGTGTGGTGGCCAAAAATGGATCGCGAGATAGAGGAGATGGTTGGAGCCTGCCGGGATTGTCAAATACATCAGAATGCCCCGGCACGTGCACCGTTACACCCATGGGAGAGTGCTAGTGCACCATGGACACGACTTCCCAACAATTATGGATCAAAGCCAACAATGGAATGTCTTCGTACCGCTTTTGCGACTGCAGAACGTGCAGTGCAGACTTTTAACAAGTCTATGAGAAAGATGGAGGGTTCAACATCATCGGAATCTCTCCATACTCGCTTAAGCAGATTTTTATTTGCATACCGCACAACACCGCAATGTACCACTGGTCATTCGCCGGCTGAGCTGTTGATGAACCGCCGCCTAACTACCAGACTGTCATTGTTAAAGCCAAATTTAGCATGGAGATTAAATGAGAAACAAGACACTTTGTTATCATCCGAGAATCAAGACCGACTTCGCGCATTCGCAGCTGGTGATCCGGTGTGGTGCAGAGACTACAGACCAGGGAAGCAGAAATGGATGTCCGGAGTCGTGATCGAAAAAACTGGTCCCCTCTCTTACCGTGTTCGTATGGGCGAGCAATTGCACCGTCGTCATGTTGACCAGATTCGCCAGCGATCGCACAATATGGCTGACGAATACAACACTGAGACGCGTAATGAGTCGAATGTCAACGTACAAAGCCCTAATGTTGAGGAGTCCCCTGCTGCTGACATACTAACAGGAACAGGACTCCTACTAGTAGATTGTGCTAAAGTACTGCCTGATAACAGCCCAGATGTAGAAGAATCATTCCCACTGCATGAATCATTGGGTGAAGATGAGAAGACAGGGTCAGACTTGTTGAATAAAGGTTGGATTGTTAAGTCACGCCTTAATTACTCTAGCCCAGTTGTGTGTGTCAGGAAGAAGGACGGCAGCCTACGGCTGTGTGCAGAATATCGCTTGCTGAATTCCTGCACTATACAAGATCGTCATCCATTGCCGCGGGTAGATGAAACACTTCAAAGTCTTGGTGGAAACCGTTGGTTTTCCTTACTTGACCAAGGTAAGGCCTACCACCAGGGCTTTGTTCAGGAAGAGTCTCGGCACCTAACGGCATTCATAACTCCCTGGGGCCTCTATGAATGGGTCAGGATTCCCTTTGGCCTTACCAACGCCCCAGGGGGCTTTCAGAGGTTCATGGAGCAGTGTCTGGAAGGAATCCGCGATGAGTTCTGCATTCCGTACCTTGATGCCCTCATTGTCTTCAGCTCAGATTTTCAGTCACACATCCAGCATTTGTCAACTGCATTAGAACGATTACGAAGTAAGGGACTAAAACTCAAACCGAAAAAATGTGAACTATTCAAGCGTCAAGTAAAGTACCTTGGACATATCATTTCAGAACAAGGCTACCACATGGATACGTCAAACATCAAAGCTATTCATCAGCTGCGAGATAGCAAACCAACCACCGTGGGTGATGTGCGACGCATCATTGGATTCCTCAATTATTATAGGAAGTATATTCAGAATTTTCACAGATTGAAAAACCCTTATTTGAACTATTGCAGAAACAGCCACAACAGGATAAAGATTCTAgttcaaagaaaaatttcaagaCTCATCGACTGCCTGTCATCTCCACCGTTGCTTTCTTACTTGGACTTCAATCTACCATTTGTACTGCATACAGATGCTAGTGCGTCAGGCCTAGGTGCTGTTTTGTATCAAGAACAAAACGGTGAATTACGTGTTATCGGCTATGCTTCAAGGATTTTTACAACTGCGGAAAAGAACTATCACCTTCATAGTGGTAAACTAGAGTTTTTGCCACTCAAATGGGCAGTATGTGATCACTTCCGTGATTTCCTGTTTTATGCACCATCCCTTACGGTCTTTACAGAAAATAACCCCTTGACATATGTGCTCTCAACTGCAAAGCTGAATGCCACAGGACAACGATGGGTATCTGAACTCGCTGATTTTCGATTCACAGTTAAGTATAGACCAGCAAAGACAAACGTTGATGCTGATGTTCTTTCCAGAATGCCGAGTAGCATAGAGGACATAATGAAATCGTGTACAAGTGAAGTGTCTCCTGATATGTTTCAAACTACAGCAGCAGCTATGTCAACACAGCACAATAGTATGGTGCCCTGGATAATGTGCCTACCTACTAAAAAACCGCCAAAGGATGTCATCAAACACGCAGCCCCTGGATCCAGAATATTGATGCGTGACTGGGAGAAATTATATATCTCAGAAGAAGGACTTCTCTGTCGAAAGACCAGTGAAAACAACCAAATTGTGCTCCCAAAGAAATTTCATCAAGTGATATACCAAGAATTGCACAGCCAAATGGGTCACTTGAGCAGTGATCGAGTTATACAGTTAGCAGTCCAACGTTTTTACTGGCCTTACATGCGAAGAGACATCGAGACTTTTATTGCCAAACGTTGTTCCTGTATCAAACAAAGAAAGCCGCATGTTCAAGGAAAAGCACCAATGCAGAGTATAGTGACCACCCAAGCGTTTGAGCTTGTTTCAATAGATTTTCTCCACCTTGAGAAAAGTGCCGGAGGTTATGAATACGTTCTGGTCATTATGGACCACTTCACCAGGTTTGCTCAGACGTATGCTACCAAGAACAATTCAGCCAAGACAGTAGCTACTAAGATATATAACGATTTTATCTTGCGATTTGGCTTCCCTGGTCGGCTACACCATGACCAGGGAGGAGAGTTTGAGAATGATCTGATGGAGCATCTAGAAGCGCTTTGTGGTGCGGGCCATTCCCGGACCACACCGTACCATCCACAAGGCAATGGCCAGGTTGAACGCTTCAATCAAACATTGCTAGGCATGCTAAGAACATTACCAGAAAACAAGAAGTCACGTTGGGCGGATTACCTAAACAATGTTATGCACGCTTACAATTGTACTAAACATTCTAGTACAGGATATTCACCATTCTTCTTATTATTCGGACGTGATCCAAGACTACCAgttgatttgatttttaaaaCAGGACGACCATCAAGCTCAATCAAAAGAAGAGATCACTCAGAATATGTGAAAAAATGGAGAGCAGCAATGAAAGAGGCGTATCAAATTGCATCGGACCGATCACAAGTCTCGCAGGCAAGAGGAAAGGATACTTATGACCGTCGAATACCATCAAGCGTGTTACAAGAAAATGATCGGGTATTAGTTCGCAACCTCAGTGGACGTGGTGGACCAGGCAAATTACGAGCTCATTGGGAAAAGGAAGTACACAGAGACGTGAAGCGGTTAAATGAAGATAGCCCAGTTTATGAAGTTGTTTCAGAAAGACATCCAAGATCCAAAACACGCGTGTTACATAGAAACTTGCTACTGCCATGTGAGTTACCTATCGAGACACAACCGGCTGATAACCAAGAAAGGAGGACAAGGACTCAACGCCGCCAGAATCAGCAGAATCAAAGTCTCCCAAGGGATACATTGTTTGATACACAATCTacttctgatgatgaagatgatCGCATGTGTCCTCAACGTTCTCGTCGTCCACCAGATACTCTACACTATACAAGCTTGGGAAACCCTGTTTCGTTCCCACAGTATCACGTTGAAAATATCGCTTGTGCTCCGAAAGTACTTTATCCGAAGATCGGTTATCCGCCATTTACGTATGGTTTTGTGCCTTACGGACACCCTCCTCGTTTCTAA

Transcript

ENSXLYT00000002736

Protein

ENSXLYP00000002594.1

MATFGKLSEFDASKEDWQSYVERLDFFFEANNIENVSQKRAILLSSCGASCYKLFRGLVQPAKPGDKSFTELVQLMLDHRRPKPNPIAERFRFNLRNRLPDESIADYVAELRRLTEYCEFGQALSDMLRDRLVCGINHERIQQKLLSEGAGLTLDKAILISQSMESAIVQSTEIRSFQQKIGISIAGAPGTESVNRVSSVGDKSRGGCFRCGNSHDAQTCPFKDKECFFCHNRGHTARKCRKKAAKEGVKDNRTVKTLAASEVVEAKSEGGNDEYPFYQLYKIGLSKEDPIIVNLSVNQHPLSMELDTGASVTVMSKDIFLDTFGSHMKIEPITAKLTTYSGDVINPIGAAEVQVQYGDQQYMLPLVITPNNGPTLLGRNWLYKIRLDWVSLFNKQPIVNSVKLDENLESLLNKYAEVFAPELGTLKDMKVRIPLNPGAKPKFFKARTVPYALKDKIEKELDRMVKSGVYEPVEYSSWATPIVPVPKPDGTIRVCGDYKLTVNQAAEVDSYPVPKAEDLLATLNGGKLFCKLDLKHAYQQLLLDDASKECLTINTHRGLFQPTRLQFGVHSATGIFQREMEKRLSHVPKLVVRIDDILLAGTDQTELLLNLEKTLMVLRNCGLRLRKEKCVFLASEVVFLGFLIDSQGVRPIESKLKPILDLPIPQDVTQLKSFLGMLNYYHRHLPNLADLLEPLHQLLRKGMSWKWGERQEAAFAKSKELLCSSSLLTHYDPQKPLMVSCDASPYGVGAVLAHVYPDGSEKPIAYASRTLSSAERKYAQIEKEGLAVVFAVRKFHQYLYGREFTIYTDHKPLLGLIGEEKAIPPLAAARIQRWALLLSAYQYKLRYRAGDSNSNADCMSRLPQPLNESSRGENEIFLTELAHSPVTSKDVKEATQKDTVLSRVLDFVLQSWPQNWSLGDDFKPFAVRQHELSAEAGCLLWGSRVIIPDRLRQSVLEELHEAHLGVTRMKALARSYVWWPKMDREIEEMVGACRDCQIHQNAPARAPLHPWESASAPWTRLPNNYGSKPTMECLRTAFATAERAVQTFNKSMRKMEGSTSSESLHTRLSRFLFAYRTTPQCTTGHSPAELLMNRRLTTRLSLLKPNLAWRLNEKQDTLLSSENQDRLRAFAAGDPVWCRDYRPGKQKWMSGVVIEKTGPLSYRVRMGEQLHRRHVDQIRQRSHNMADEYNTETRNESNVNVQSPNVEESPAADILTGTGLLLVDCAKVLPDNSPDVEESFPLHESLGEDEKTGSDLLNKGWIVKSRLNYSSPVVCVRKKDGSLRLCAEYRLLNSCTIQDRHPLPRVDETLQSLGGNRWFSLLDQGKAYHQGFVQEESRHLTAFITPWGLYEWVRIPFGLTNAPGGFQRFMEQCLEGIRDEFCIPYLDALIVFSSDFQSHIQHLSTALERLRSKGLKLKPKKCELFKRQVKYLGHIISEQGYHMDTSNIKAIHQLRDSKPTTVGDVRRIIGFLNYYRKYIQNFHRLKNPYLNYCRNSHNRIKILVQRKISRLIDCLSSPPLLSYLDFNLPFVLHTDASASGLGAVLYQEQNGELRVIGYASRIFTTAEKNYHLHSGKLEFLPLKWAVCDHFRDFLFYAPSLTVFTENNPLTYVLSTAKLNATGQRWVSELADFRFTVKYRPAKTNVDADVLSRMPSSIEDIMKSCTSEVSPDMFQTTAAAMSTQHNSMVPWIMCLPTKKPPKDVIKHAAPGSRILMRDWEKLYISEEGLLCRKTSENNQIVLPKKFHQVIYQELHSQMGHLSSDRVIQLAVQRFYWPYMRRDIETFIAKRCSCIKQRKPHVQGKAPMQSIVTTQAFELVSIDFLHLEKSAGGYEYVLVIMDHFTRFAQTYATKNNSAKTVATKIYNDFILRFGFPGRLHHDQGGEFENDLMEHLEALCGAGHSRTTPYHPQGNGQVERFNQTLLGMLRTLPENKKSRWADYLNNVMHAYNCTKHSSTGYSPFFLLFGRDPRLPVDLIFKTGRPSSSIKRRDHSEYVKKWRAAMKEAYQIASDRSQVSQARGKDTYDRRIPSSVLQENDRVLVRNLSGRGGPGKLRAHWEKEVHRDVKRLNEDSPVYEVVSERHPRSKTRVLHRNLLLPCELPIETQPADNQERRTRTQRRQNQQNQSLPRDTLFDTQSTSDDEDDRMCPQRSRRPPDTLHYTSLGNPVSFPQYHVENIACAPKVLYPKIGYPPFTYGFVPYGHPPRF

Uniprot

Uniprot term	Description
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF13975	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan