Gene detail

Detailed information of ENSXLYP00000003556.1 in Pelagia noctiluca

Genomic Location: :...
NR annotation: CAH1791252.1, unnamed protein product [Owenia fusiformis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSXLYT00000003712

GCACCATTGCGTCTGCGCATTTCTCTCCATGCTTCTTTTCAAAGTTGACTAGAAGATGGCGGACAGTAAAAGAGAGCGTCGTATTATTGCCGATGATGACGAGAAGATCATATTCGAAACTTCTGAAGAAGTGTCAATCTATCCGACTTTCGACTCCATGAAGATTCGAGAGGATCTTCTAAGGGGTATTTACGCATATGGATTTGAAATACCATCAGCCATCCAGCAAAGAGCAATTCATCCAATTGTGAAAGGAAGAGATGTTATTGCTCAGGCTCAGTCTGGTACTGGTAAAACTGCAACTTTCTCAGTTTCTGCATTGCAATGCATTGATACAAAAATAAGGGAGACCCAGGTTCTTGTCTTGTCACCGACTAGAGAGCTGGCTGGTCAAGTTCAAAAAGTTATCTTGGCTCTGGGAGACTACATGAATATTCAATGTCATTGTTGCATTGGTGGCACAAATATTGGTGAAGACATAAGAAAGCTGAATTATGGTCAGCATATTGTCTCTGGAACACCCGGAAGAGTTCATGATATGATAAAAAGAAGGAATTTAACAACTAGATCAATAAAGATGTTGATTCTTGATGAAGCTGACGAAATGCTGAATAAAGgtttcaaagagcaaatttacGATGTTTACAGATATCTACCCCCTGCAACACAGGTGGTCCTCGTCAGTGCCACACTGCCAAACGAGATTCTTGAAATGACAAACAAATTCATGACAGATCCCATTCGAATTCTCGTTAAACGtGATGAGTTGACCCTGGAAGGAATCAAGCAATTTTTCGTTGCTGTCGAAAGAGAGGAATGGAAATTCGACACGCTATGCGACTTGTATGACACGCTCACGATCACGCAGGCCGTCATTTTCGTGAACACGAAGAGAAAAGTGGATTGGTTGACGGAGAAGATGCGTGAGGCTAATTTCACGGTGTCAGCAATGCATGGAGATATGCCGCAGAAGGAGAGAGAAGCCATTATGAAGGAATTTCGGGGTGGTGCAAGTCGTGTTCTTATCTCGACTGATCTGTGGGCAAGAGGTCTGGATGTTTCTCAAGTATCTCTGGTCATCAATTACGACCTCCCAAACAACCGTGAGCTGTACATTCACAGAATCGGTCGATCAGGAAGGTTTGGAAGAAAGGGAGTTGCGATCAACTTCGTGAAATCTGATGACATCCGAATCTTGAGGGATATTGAACAATATTTCAGTACGCAAATCGACGAAATGCCTATGAACATTGCTGATCTGGTCTAATCAGCGAGGAAGAACAGTCAACTATTAGAGGAGGAGACACGGTGGCATCAAGAAACCCTGTTCAGTTGAGAGCATAGGTAACATGTGTAAGGGTGAAGAGGAATACGAAACTGTATGTAACTATAACTTTCAGTAGAGTTTAATGGGTCTTTGGCAAAATTATCTTGAAAGACGGATTTCATTTGTTCTATGGGCCTAAAAGCTATGAAAATGCACTTTTCAAAtgatttcttgaatttgttGTGCCAAGAATATGCCAAAGTATAGccaagatttttcaagaaaagattTAGGTAACTTTATGTTTATGAAAATGGTGGCAAAGACTGTTTTTTTATCTTGAGAATGGAGTGGTTGGTTTTACGAAATGATTTTCTTCATATAAATTGGAAATTTCTTTCAAAGCTTGTATCTCTCCAAACTTACTATAATGATCACCTTGGATAATCTTTACATTTTTCATTCATAAATCATCGTTGTAGCTAAATACGTTACGAAAATCGCAGAAGGAACCAAATTCAAAGTTTGCCAATTTCGTTGAAAATCACCATGACTTCAAAACCGGTACAAACTGTCCAGTAATTTTCCATATTTCTACAAAACCTtggaaaattatcaaaaaattgTATCGACATTGCTACGAAATGGTTTGGAAATCGTTCCGATTCACAACGATGATTTCTGGACGCTTTTTTGCatttcttcttatttgttgATATTTAACACTTTTCATTGATAATTGTTTCCAATTTTAAATGAGTCATTGTTCCTCGAGACTTGTTCAACTTCTGGCATATTTTAGTTATGCCCGTCCCCTGGGTTAAAATGCTTTGTCTTGCGGTGAAGTCTGTTGGTTTATTTGGTGCTGATATATTTGATCTTCTACCTGATATCGCAAGAGCATACCACTCTCTTGTATGCCTTACCTTGTCTGGTGTGATGTCTTACTTCTTATCGTGTTGTAACACTCTGGGCGGTGTGAG

Protein

Uniprot

Uniprot term	Description
Q7ZVA6	Eukaryotic initiation factor 4A-III OS=Danio rerio OX=7955 GN=eif4a3 PE=2 SV=1
B5DG42	Eukaryotic initiation factor 4A-III OS=Salmo salar OX=8030 GN=eif4a3 PE=2 SV=1
B7ZTW1	Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis OX=8364 GN=eif4a3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13025	EIF4A3, FAL1; ATP-dependent RNA helicase	EC:5.6.2.7	Translation factors	ko03012	deepkoala