Detailed information of ENSXLYP00000005750.1 in Pelagia noctiluca

Genomic Location: chr11:11067659...11105817
NR annotation: CAB3979065.1, agrin-like isoform X1 [Paramuricea clavata]
Species Pelagia noctiluca · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A2ASQ1Agrin OS=Mus musculus OX=10090 GN=Agrn PE=1 SV=1
P25304Agrin OS=Rattus norvegicus OX=10116 GN=Agrn PE=1 SV=2
O00468Agrin OS=Homo sapiens OX=9606 GN=AGRN PE=1 SV=6
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000507 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 activity RING|U-box · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00093
all species →
VWCvon Willebrand factor type C domainDomainInterproscan
PF07648
all species →
Kazal_2Kazal-type serine protease inhibitor domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002350
all species →
DomainKazal domainInterproscan
IPR001007
all species →
DomainVWFC domainInterproscan
IPR036058
all species →
Homologous_superfamilyKazal domain superfamilyInterproscan
IPR036880
all species →
Homologous_superfamilyPancreatic trypsin inhibitor Kunitz domain superfamilyInterproscan
IPR003884
all species →
DomainFactor I / membrane attack complexInterproscan
IPR050653
all species →
FamilyProtease Inhibitors and Growth Factor AntagonistsInterproscan
IPR020901
all species →
Conserved_siteProteinase inhibitor I2, Kunitz, conserved siteInterproscan
IPR003645
all species →
DomainFollistatin-like, N-terminalInterproscan
IPR002223
all species →
DomainPancreatic trypsin inhibitor Kunitz domainInterproscan
IPR001507
all species →
DomainZona pellucida domainInterproscan
IPR000083
all species →
DomainFibronectin, type IInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10913
all species →
FOLLISTATIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0004867
all species →
Molecular Functionserine-type endopeptidase inhibitor activityInterproscan
GO:0007275
all species →
Biological Processmulticellular organism developmentInterproscan
GO:0030154
all species →
Biological Processcell differentiationInterproscan
GO:0005576
all species →
Cellular Componentextracellular regionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSXLYP00000005750.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Pelagia noctiluca tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Pelagia noctiluca, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP