Gene detail

Detailed information of ENSXLYP00000011967.1 in Pelagia noctiluca

Genomic Location: :...
NR annotation: XP_022314358.1, FRAS1-related extracellular matrix protein 1-like [Crassostrea virginica]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSXLYT00000012520

TCCTCTTCAAACATAACAATATCTGGCCTGCAAGTGGACACTTGATCTTCTCACAACAAAACAACAGAAGAGAGGAAATTTGCTCCAAGTTTAGAGTGATATATAAACATGACGCAACATATATCCCTAATATTGATTTTATTCCTTTCGAGATTAAAATACGGCAAGGCAATACTGGCCAATACCGTATTTTGAAGTATCATATCAAAGTCAACATTCTACCAGCACACGCAAAGGAACCTCCCTTTCTATATAGCAGATTCTCACGCGTTGTCATCAAACAGTATGCATTGAAGCAGATGAAATCTTCCAACATACGAGCAGTCGACTTCAAAACGAGTGCTGAAAATCTGCTTTTGAAAGTCTCAGCAAGACGTCGTAATAATCTCGGAGGGTTTTTCGCTACAACTGAAAAACCTGACCTACCCCTAGAAGGCTTTACACAAGAGCAAATAAACAAAGAGATGATAATTTTCGTCTCCCCGAAAGTCATAAAATCGAGATCTGCCATTCAGCAAATGTATGTACAAGCTGTTGACATGTATGGTAAAACATCGACAAGAAAGCTGCggattttgttttttgttagGAAATTCGTTGCTTACTACCTATCAGTTGTTCGAAACAGTCCCATACACGTGCTTGAAGGACACTCGAACAATATCTCATCTTTCGACTTGGACATTGCGTGTAAGAACCCCAGATGCAGAAGAGCCAAGTTTTCTGTGTGGACTGGTCCAGACAATGGCCAACTTACGCAGAACTCCAAGCCGGTGACGGTGTTTACAAAGAAAGACATTTTAAGTGGGACACTGATGTACCGACATGATGGAAGTGAGACACTGATTGATAACGTGGTTGTTACTGTAAGTGACGGCTACCAAGTGGCCTATTTGACATTGAGCTTCGTTATCGAGCCTTTAGACGACTCCCCGCCATTTTTGAGCATACACATGCCTATCATTACGTCAAATTATAGACGAACGAAGATTCGGACAAGCGTTTTAAGTGCAGCAGACCCGGACAGTGATTCAAAACGTATTATGTTCCACATCATGAAGAGGCCACAACTGGGAAAGATCGTGCGAATCATTGACAATACTCGTTTTGAAAACGCGTTCAGGTTCAATCAGACGGAGCTGGAACGAGGCTTGATTTATTACGAGAAGTATTTTGACAAACCTGCAGATGACTTGTTCACTTTTATTTTGTCTGATGGAGGCAGTGATCCCAATCTATCAAGAGAATACACATCTAGGGTGAAGATACTGGCTGTTGATAAGACCCCACCGTATAAAACATCCAGGAATGACTGTATTGTAAGAATCAACGAAACAGATCTTGCCGTGTCTTTGAATTTTCTATCGTACAAAGACGACACATCTTCTTCCTCACAAATCGTTTTCAATGTCAAGCTACAACAGACTAAAAATGAAACTATCATCAGACCCAAAGACATATATCAACTAAGTCAACATGAGAGAGTTCCTGTGAATAACTTTACCCAAGATCAAATCTTCTATAACAAGATATACTTCATAAACAGATTCACGGAGCTAGGCCTATTGCATCAGACGGTTTTCTTGAAATTCGTCGTTGCAGACGGTGGAGGCAATACAACACCCCTACAAAAATGCAAGATAATTGTCCAGCCAGTTGATAACACCCCTCCTATACTTATGCACAAGGAGGATTTGAAGGTTCTTGAAGGTGGAAATATTTGTTTCAGTAGCAAAAATCTGATTATATCAGACATCGACACAgaattgaaaaaactgaaattctCCATTCAAGCATTGCCAACGAATGGTGAATTCCAAATCGACAACCGAGCTCTAGGTATTGGAGAGTGGGTCCCATACGCAAAACTAATTGCTGGTTCGTTGTGTTATCTCCACGATGACAGTGAAACTCTATCAGACGATTTCGTTATGATTACATCGGATGGCGTACAAAGCTCTACAAAGGAGGTCAAAATCAGCATTCTTCCAGTCAATGATGAGAGGCCATATTTTGCTAGGGACACTGTGAAACTTGATGTGATGGAAGCTTCCTCCATTGTTCTCAACTCAGAACTGTTTGAAGCTGTAGACAAAGACTCAAAACCGTCGAATTTGATATTTTACATGATGAAGCAACCAGATTCAGGATTCGTTACACTGAGAGAAGAATATGCTACGAATTTCACTATTGACGATATTGGAGATGGTGAGCTTGTTTACTTTCAAAGCGATATTGAAATAGGC

Protein

Uniprot

Uniprot term	Description
Q6NVD0	FRAS1-related extracellular matrix protein 2 OS=Mus musculus OX=10090 GN=Frem2 PE=1 SV=2
Q5H8C1	FRAS1-related extracellular matrix protein 1 OS=Homo sapiens OX=9606 GN=FREM1 PE=1 SV=3
Q8VHY0	Chondroitin sulfate proteoglycan 4 OS=Mus musculus OX=10090 GN=Cspg4 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16184	Cadherin_3	Cadherin-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051561	Family	FRAS1-related extracellular matrix	Interproscan
IPR039005	Repeat	CSPG repeat	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45739	MATRIX PROTEIN, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan