Genomic Location: chr13:12817456...12861418
NR annotation: XP_020624234.1, uncharacterized protein LOC110061727 isoform X1 [Orbicella faveolata]
Species Pelagia noctiluca · all data for this species · gene families
| CDS |
| ENSXLYT00000015190 |
| Transcript |
| ENSXLYT00000015190 |
| Protein |
| ENSXLYP00000014539.1 |
| UniProt accession | Description |
|---|---|
| Q92626 | Peroxidasin homolog OS=Homo sapiens OX=9606 GN=PXDN PE=1 SV=2 |
| Q3UQ28 | Peroxidasin homolog OS=Mus musculus OX=10090 GN=Pxdn PE=1 SV=2 |
| A4IGL7 | Peroxidasin OS=Xenopus tropicalis OX=8364 GN=pxdn PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000313 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03098 all species → | An_peroxidase | Animal haem peroxidase | Domain | Interproscan |
| PF14670 all species → | FXa_inhibition | Coagulation Factor Xa inhibitory site | Domain | Interproscan |
| PF13330 all species → | Mucin2_WxxW | Mucin-2 protein WxxW repeating region | Family | Interproscan |
| PF07645 all species → | EGF_CA | Calcium-binding EGF domain | Domain | Interproscan |
| PF00431 all species → | CUB | CUB domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037120 all species → | Homologous_superfamily | Haem peroxidase domain superfamily, animal type | Interproscan |
| IPR000152 all species → | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR019791 all species → | Family | Haem peroxidase, animal-type | Interproscan |
| IPR010255 all species → | Homologous_superfamily | Haem peroxidase superfamily | Interproscan |
| IPR035914 all species → | Homologous_superfamily | Spermadhesin, CUB domain superfamily | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR000859 all species → | Domain | CUB domain | Interproscan |
| IPR009030 all species → | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR018097 all species → | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR002126 all species → | Domain | Cadherin-like | Interproscan |
| IPR050702 all species → | Family | Peroxidase Activity and Reactive Species Generation | Interproscan |
| IPR025155 all species → | Domain | WxxW domain | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR049883 all species → | Domain | NOTCH1 EGF-like calcium-binding domain | Interproscan |
| IPR015919 all species → | Homologous_superfamily | Cadherin-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11475 all species → | OXIDASE/PEROXIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004601 all species → | Molecular Function | peroxidase activity | Interproscan |
| GO:0006979 all species → | Biological Process | response to oxidative stress | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0007156 all species → | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
ENSXLYP00000014539.1.Genes whose expression across the transcriptome samples of Pelagia noctiluca tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Pelagia noctiluca, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
