Gene detail

Detailed information of ENSXLYP00000015446.1 in Pelagia noctiluca

Genomic Location: :...
NR annotation: CAB3988090.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSXLYT00000016118

AAGAAATATTTCACTGCGAGTATGGCCGAGGGAGACACAGTGATGGAGCACATAAATAAAATGAGATCGTTGGCAGGGCAGCTGAAGTCAGTGGGAGCACCGATCACGGAGGATGATCAAGTCGCTACATTACTATGTAGTCTCCAAGACTCGCATAATAATCTTATAATAGCCCTGGAGTCTCGGGCAGATCATTTAACTATGGAATTCTTGGTGGCAAGACTGCTAAATGAAGAAAGTAAACGCAGTGAAAATTCATCAGTTGCTGAAGCTACAGAAAAGGCTATGGTTTCATTCAAAGGGAAATCACGTGATCACTCTGGTTATAAAAGTCAGTCGGTCAAACCTGGTGGGGCTAAGAAAAAAGGGAAATGCTTCAATTGTGGTTTGCAAGGACATTATGCAAAAGAGTGTAGAAAGcctaagaaaaataaattagaGCACGCAAACACACTGCAGAGTACAGAAAGTGATGAAGAAAATCATATCTTGTTTTTGATAACTGAAAACAAAGAACAGGGAAATATCATGGATAAATATTGTGAATTTTCTTCACCAGAAGTCGTGCGTTTGGGTGATAATAGAGAAGTGAATGTTTATGGAAAAGGGTCGATATGGATTAAGATAAAAGCGGAAAAATCTTATAAACTTGAAAGAATCTATTTTCGGTTAGTGCAATTACAAGAAGAGGCTACACAGTTTCTTTTAAGAATGAAAATTGTGATAAATGACTCTGGAACTGTACTAGGATCAGGGAAAATGAAAGGAAAATTATTCGCTATGGCTGCTTCTACTCAAGATACTTCTGAAGAGTTATGGCATAAAAGATATGGACATTTAGGCAGCAATAATCTGAATGTTTTGCAAAATAAGAACATGGTTGAAGGGATGCGCTACAAACCTGCAAATAATGAGAACAAGGAGCCTTTTGATGCTTGTTTGAAAGGAAAGCAAAGTAAAAATTCCTTTCCAAAGGAGCAAGCAACCAGGGCATTTGATTTATTGGAAAAGTTTGGGGGCAATAGCTATTTTGTCACATTCATTGACGACAAATCTCAATATACAGCTATCTATTTCATGAAGAACAAAAGTGAAGTGTTCGAGAAATTCAAGGAGTACGAGGCAATGGTGACTAATGTTACAGGAAAACGAATCAAGATTTTACGTTCAGATAACGGAGGAGAGTATACGTCAAAGGCTTTCAATGATTATTTGAAAAGCAAAGCTATACAGAGACAGTTTTCAGTACTTATTAATACCGATCATTATGGAAATCCTGCCCAATCAAATATCATTACAAATCGCAAGGAATACATCAAATACAATTTGGACGCTGAGCAAATTGATGGATTTGCTAAAACGAGAAGTGGAAGCTCAAGAGTTGTGCCTAATCAACATCAGGGTGCACGAGGCAGGCCTAAATTTGAAATACCAGAGAATCAGCTCAAATTCTTAAGAGAGTTTGGTTTCACTTGGACTCAAGTGCAGAATCTTCTGGGAATTTCACGAAGTACACTTCTACGACGAAGGAATGAGCTGGGTATGAATTCAGGAGATGAAGGAGAGAGGTTTTCCGATATCAATGATGAACAACTAGTGGATGTAATGCAATTGGTTATGGATCTGAATCCAAACATTGGGCAAAGACGAATGATGGGCGCATTGCGAGGTCGAGGGCTCCATGTTCAACAGAGAAGAGTACCAGAGATGATGCGACTGTTAGATCCAATTGGTACTTCACTACGATGGTTTGGGTGCATATACCGCCGGAGCTACTCAGTGCCATGTCCAAATATAAACAATCATAAACTGATCCGTTGGCGCTTTGTCGTCCACGCTTGCATTGATGGATATTCACGACTGGTAATCTATCTTCGGTGTGCGGATAATAACAGGAGTTCAACAGTCCTAGCATTCTTTGAAAAGTCAACAGAGGTTTTTGGCCTCCCATCTCGTGTACGGTGTGACCATGGTTTAGAGAATGTGCAAGTGGCAGAATTCATGCTTTAA

Transcript

ENSXLYT00000016118

Protein

Uniprot

Uniprot term	Description
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13976	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR025724	Domain	GAG-pre-integrase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46791	EXPRESSED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan