Genomic Location: chr13:11767697...11781863
NR annotation: BDP28891.1, F-actin capping protein subunit beta, partial [Cladonema pacificum]
Species Pelagia noctiluca · all data for this species · gene families
| CDS |
| ENSXLYT00000016950 |
| Transcript |
| ENSXLYT00000016950 |
| Protein |
| ENSXLYP00000016254.1 |
| UniProt accession | Description |
|---|---|
| P47756 | F-actin-capping protein subunit beta OS=Homo sapiens OX=9606 GN=CAPZB PE=1 SV=5 |
| A0PFK7 | F-actin-capping protein subunit beta OS=Sus scrofa OX=9823 GN=CAPZB PE=1 SV=2 |
| Q5R507 | F-actin-capping protein subunit beta OS=Pongo abelii OX=9601 GN=CAPZB PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007378 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01115 all species → | F_actin_cap_B | F-actin capping protein, beta subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001698 all species → | Family | F-actin-capping protein subunit beta | Interproscan |
| IPR019771 all species → | Conserved_site | F-actin capping protein, beta subunit, conserved site | Interproscan |
| IPR037282 all species → | Homologous_superfamily | F-actin-capping protein subunit alpha/beta | Interproscan |
| IPR042276 all species → | Homologous_superfamily | F-actin-capping protein subunit alpha/beta, domain 2 | Interproscan |
| IPR043175 all species → | Homologous_superfamily | F-actin-capping protein subunit beta, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10619 all species → | F-ACTIN-CAPPING PROTEIN SUBUNIT BETA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008290 all species → | Cellular Component | F-actin capping protein complex | Interproscan |
| GO:0051016 all species → | Biological Process | barbed-end actin filament capping | Interproscan |
| GO:0000902 all species → | Biological Process | cell morphogenesis | Interproscan |
| GO:0010591 all species → | Biological Process | regulation of lamellipodium assembly | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
| GO:0051490 all species → | Biological Process | negative regulation of filopodium assembly | Interproscan |
| GO:0003779 all species → | Molecular Function | actin binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0030036 all species → | Biological Process | actin cytoskeleton organization | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10365 | CAPZB; F-actin-capping protein subunit beta | - | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Pelagia noctiluca tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Pelagia noctiluca, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
