Gene detail

Detailed information of ENSXLYP00000026970.1 in Pelagia noctiluca

Genomic Location: :...
NR annotation: XP_032235756.1, single-stranded DNA-binding protein 3 isoform X6 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSXLYT00000028191

CTTTGATCTATGGCCTCGTATTCAATTATGGCTCAATCTGGCTTTATTTCGTTACCTATTTGGCTTAGTGGGCTGAATCGCATCTGGCAACCCTGCTGTCAAGTGCGGCACGATGATCCCCGAAATGACAAATTCGTTGACAGTCGAACACAGCATGTACGCTTCGAAAGGCAAAGGCAACACCAACAATGTCCCCTCGGAGGCCGAAGCCAGCGAAAAGCTTGCTTTGTACGTGTACGAGTACCTGCGACATGTCGGAGCTCCGAAGGCCGCCCAGACCTTCCTGAGCGAGATTCGCTGGGAGAAGAATATCACGCTAGGGGAAGCACCCGGATTTCTTCACGCTTGGTGGAGTGTGTTCTGGGATCTGTACTGCGCTGCTCCTGAACGAAGGGATAACTGTGATCATTCAGCAGAAGCAAAGGCCTTTCATGATCTTAATTCTGGAACGTTACCCTCTCCCAGTTATGCTCCTGGCCCACCCAATGAGATGCCCATGGGCATGCAGCCTGGGTTTTATCAGCCCCCTTCACACTCCAGACACCCCAGTCTTTCACAGTCGCAAACATCACCTCACCCACAGCCGTCTCCTTTACCGCAAACACCTGCACAAGCAATGATGCACAGCCAGTACATGCAAGCAGCTCGATATGGTGGACCACGACCTCCAGGGTTAAGAATGCCAGGCCAGCCTTCGTCTTCTGGAGTTCCTGGTCCTGGTTTAATGCCAAATTCAATGGATCTCACTCGACAACAGCAACCACCAAGCCCTTATCAATCCCAGTCAATGATGAACGCGATGCAAAGAATGAATCACCCCCGGATACCTGTACCCCCGAACTATAGCCCCATGCGACCAATGCCAAACTCGACGATGGGACCTGCAGGAATGCCAATGGGCCCAAGAGTACCGTGGACTTCTGCATCCACTCCGACAACGATAACTCCAGGACCGCCTGGTACGCCCATCATGCCAAGTCCGCAAGATCCAACGGGACCGtacGGAATGGTTGGTCCTGATTCACAAAACGACTCTATCAACgATGGACAAGATTCAATAGACGGAGTACCCGATGATGCGAACGAAACGGTGGCCATCCAGCGAATCAAGGAATCAATGAAAGAAGAGATTATAAATCGGTTGCAAAGAAAATTCACATTGTGATGGTATTTAAACAAATTCTTcgttttaatttttttgaagcttttaatttttttatttcgtATCCATTTGTTTTAGTTGTTAGAACGTAATGTCTGTCTTAGCTTTGAGAATTTGTAGTCTTAGTGCTCGAGCTACAATCTTGgaaaaaatatattgaaacGGGGGcagttttcaaatcaattttgccccctcccccaaGACGATTTTGTTCTTAATTGCTCAATATCTAGCGGTGTAGCCTTTGCACCCTGGCGACATTGTTCAGGGGGAAGTGGGTTTAAAATATTGATAAGAGGATGAACAATTTAGAGTTGTATGATTTTGTGAACAAGTTCCAGTATTTGTGACCAGGAACGGGGTTCAAAATATTGAGCAAAGGATGACAAATTGAGAGTTGTATGATTTTGTTGACAAGTTCCAAAATTTGTGTCGAGGATTATATGTCTATTGTATAGGCTATAATCAATCACCATAGTAAGAATCTACGTTTCTGAAGAGCTCAATTTCTAGGATAACGAGAGCAGGGAAAATTTGCTTCGTTAGCATTTAAAACACGAAAGTAAAATCCATTTTTTGGATCTTCCTGCAAAATCAGTCTTTAGGGTTTTATATTCACAAAAGAGTATATTttgggttaagaaacttgctaagaaactttcctTGACATAATTGGGCTGAAAGCTGAGAAACTCTGGAACGAAAATTTAGCATAGTTTTTTGGAAGATTCATTTACTTTTCTGGCCAACTCGGCAAATCAAAAGAAATGCGGAAAACTCTCGCTTTTAGGGGGAGGGGGACGCTGAAGTAAATACGAATATACTTGCTGGGAGAGGTGCAAGGGTGATGATTAATGGGGTTGTGGGTATTTGATTTAACTGTTGTTAAATGGGGTTAGTTTGAAATTATTGGGAATAATTCACCTGAGAAGCCTGATGTATCATGTAGGTAACGAAATAATTTAAT

Protein

Uniprot

Uniprot term	Description
Q9BWW4	Single-stranded DNA-binding protein 3 OS=Homo sapiens OX=9606 GN=SSBP3 PE=1 SV=1
Q9D032	Single-stranded DNA-binding protein 3 OS=Mus musculus OX=10090 GN=Ssbp3 PE=1 SV=2
Q9CYZ8	Single-stranded DNA-binding protein 2 OS=Mus musculus OX=10090 GN=Ssbp2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04503	SSDP	Single-stranded DNA binding protein, SSDP	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008116	Family	Sequence-specific single-strand DNA-binding protein	Interproscan
IPR006594	Conserved_site	LIS1 homology motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12610	SINGLE STRANDED DNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan