Detailed information of ENSXLYP00000028881.1 in Pelagia noctiluca

Genomic Location: chr14:774338...776707
NR annotation: XP_020906216.1, nucleolar complex protein 4 homolog A [Exaiptasia diaphana]
Species Pelagia noctiluca · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BHY2Nucleolar complex protein 4 homolog OS=Mus musculus OX=10090 GN=Noc4l PE=2 SV=1
Q5I0I8Nucleolar complex protein 4 homolog OS=Rattus norvegicus OX=10116 GN=Noc4l PE=2 SV=1
Q4VBT2Nucleolar complex protein 4 homolog OS=Danio rerio OX=7955 GN=noc4l PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007848 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03914
all species →
CBFCBF/Mak21 familyRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027193
all species →
FamilyNucleolar complex protein 4Interproscan
IPR005612
all species →
DomainCCAAT-binding factorInterproscan
IPR016024
all species →
Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12455
all species →
NUCLEOLAR COMPLEX PROTEIN 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005730
all species →
Cellular ComponentnucleolusInterproscan
GO:0030692
all species →
Cellular ComponentNoc4p-Nop14p complexInterproscan
GO:0032040
all species →
Cellular Componentsmall-subunit processomeInterproscan
GO:0042254
all species →
Biological Processribosome biogenesisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14771NOC4, UTP19; U3 small nucleolar RNA-associated protein 19-Ribosome biogenesisko03009deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Pelagia noctiluca tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Pelagia noctiluca, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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