Gene detail

Detailed information of ENSXQXP00000013982.1 in Sanderia malayensis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Sanderia malayensis · all data for this species · gene families

Sequence

CDS

Transcript

ENSXQXT00000015632

TATTAACTCCACCCATCTCCTCCCACCCATTGTTTTAAGTGTCAATCAAACGAGACACTCGCATTACAACGTTATGCACTGGACAAAATTACTTCATCGAGTCGTGTCTCGATCAGACTTCCTCTCATGCGAGTATGTATTCGCATTCTCTTAGAGTATGCGAACTCAATATCGCATTCGCATTCAACTCAATGTCGCATTCGCATACGAATCGCATTCGCATTCACGGAGACACTATTATGTCCACTATCTAACTCTATACTCACAGCGAAGCGAACTCAGTCAAGTCAGCAATCAGTATGGCAGCCACCGATCATACTAACCATCCCAATAAAAATTCCCCAAAAGATGCGCTGGCAATGGCATCGATACTCAAAGAAATGGGTGTAAGTGAATATGAGCCTCGCCTCATAAATCAGATGTTGGAATTTAGCTATCGCTACATAACAGATGTTTTAGAAGATGCCAGAGTATATTCTCTTCATGCTTCCAAAAAGCATATTGACCAGGCTGATGTTGTCCTAGCTGTTGAAAGAAGAATGGATCATTCTTTCACATCAGCCCCACCTAGAGAGTTTCTATTAGAAGTTGCGAGGAACAAAAATGCTCAACCTTTACCATTAATTCAAGACAAAAGTGGATTGAGACTTCCACCAGATAGATACTGTCTTACTGGAAACAATTATAGATTAAAGACAGGAAATTTATCACAGAGAAAGATTGCTTCTCAAAGACTTACAAATACTGTTTCAACTTCAAAGCTGTTAACAAACCAATCTTCAATAGGAAGCAGTGTAATAAAACCGGCTTTAAGTCGAGGCGCAACTGCAGTTATGAATATTGGAAAGCTAAAACAGGGCTCTATTGGGCCAGTTTTACAGACAACATCTCAAGCTATGGAGAAAAAAAATCTTGTGGAGACCACTGCTCCTACACATTCTGTAAGCGATATGAAGACTGTTCGAGTTAAGACAGAACCGCCTGAAACATCTAGCACGGTAGCGTCCCTGCCATCCATGGAAGAAACTGCAGCCAGTGCTCACAATCAGAACTTTCCAAATTTATTGAAAAGGAAAAGAGAAGAAGAACAGGAATGTATCAACCCTTAGTTTTATATGCGTATTGGTACAATTTTTAATATCTGGTATATATAGTCAAAGGAAGTTTCTTCACTGACGTCACAGATTTGCAGATTCAGCGACGCTAATGCATGCACAGCTTGAAGGGATGATGATTGATGCGTGCAcagttattttaacaaatTCTGGTTAACACATGCTGCTTAAAAGCCGGCGAAGTAAGCCCTCTTTTTGAAGAACTGAACTGTATGCAGTGAATCTAGCTTTTCTCTTACGAACACACGAACATGACCATTCTTTAGGCtctccattttttcaaactgcCCTTCCCACTGCGGGATTGCATGTTAAGCTGTTATATAATGCCTAATCTCGCCAAGTTGTGAATGTTTTGTTCTTTGTCACTCTTTTCAGCCTTTTTAGCTTCTGCTTTAAGTTTTCTGTCATTTTCCGAATTAACCTTATTCGGTTTGCCCCGCTTTGTAATGAACAACTTGAAATTGGCAAAAACTTTTCTGTCATTTGATTGGGTAGCAATTACAGGTGTATCCTTCTTCTTTCTTATCATTTGCCAAGGTTAAGGCAAATCTTTTGCTTTGAGGTTATTGTCTCGGTTTACTCTAACTCTATTTGACTTGAATATTGTCAACACTTTCTAATTTTGTTTGGCAAGCTTGCAAACGCTGTTGCGTAGAGTTTTTTCGCATACATTATTTTCTGATAATCTTCTTAGTTGGCCCTCCAATGTGCATTGATGTTCATTATTGTTAAGTTTGAACTGTTGCAATCTATTGATCACGATTCAGTTATTGAGGCATTCGCAACATCACGATGTGCCCGGAGTATTCGCTCTAGAATATAATCCTGGGGGCCCAAAATGCAGGCTCGCATTGTTATTGGTCTTGATAATGTCATTAATAGggagagttgactgtattagGATTTGCTATTTTGTAAAGTGACAGGCGCTCATGGCCCTGGCTACAACGCCACTGAAGAAAGGGGAATTTCAGGATAGAGGGTATTGCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02291 all species →	TFIID-31kDa	Transcription initiation factor IID, 31kD subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003162 all species →	Family	Transcription initiation factor TAFII31	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR051431 all species →	Family	Transcription initiation factor TFIID subunit 9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48068 all species →	TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0000124 all species →	Cellular Component	SAGA complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0043966 all species →	Biological Process	obsolete histone H3 acetylation	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14535	TAF9; transcription initiation factor TFIID subunit 9	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.