Gene detail

Detailed information of ENSXQXP00000018324.1 in Sanderia malayensis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Sanderia malayensis · all data for this species · gene families

Sequence

CDS

ENSXQXT00000020343

ATGACGAAAATAAAAGAAGTGAACAGAACAGCTAACATTGCATGGAGTCCAGCCAACCAGCATCCAATATACCTTGCTGCTGGCACAGCCGCCCAGCAGCTAGATGCCACATTCAGTACTACTGCAGAGCTGGAGATTTTCCATGTGGATTTTGGCAGCAAGGATTTGGAGATGCCAATTGCAGGCAGCTTGCAATGCAACCAAAGACTGCACAAAGTAATTTGGGGCAGTCATGGAATGTTAAGTGCCCAGCACAGCAGTGGTGTTATAATTGGAGGCACTGATAATGGACACATATTCGTCTATGATGCTGCCAAGATACTCGCTGGAGACACAGACAATGCTCTGGCATTGCAACTCGATAAACACACTGGGCCCGTTCAAGCATTAGATATCAACAGTTTTCAAGAGAATCTACTCGCTTCTGgagcaaaCGATTCTGAGATCTACATATGGGATCTGCGAAAGCCGGAAAACCCTTTGACGCCGGGGGCCAAATCGACGCCTCTGGACAGTGTGACTTGCGTGCATTGGAACAAGCAGGTGCAACACATCATGGCTTCATCGTCACCGTCCGGGCGCGTGGTCGTTTGGGATTTGCGAAAGAGCGAGCCAATCATTAAAGTCGGTGACACGTCCGCCATGTTGCATTGCAAATCCATGGCATGGCATCCAGAAGTCGCCACGCAAATGGTCATCGGTAACGAAGATGATAGATACCCTGTTATTCAGCTTTGGGACCTGCGATTCGCTACTTCGCCAATGAAAGTACTAGAGGGACACCAAAGAGGTATATTATCTTTGGATTGGTGTAATCAGGACCCCGATCTTCTAATGAGTTGTGGCAAGGACAACAGAATCCTCTGTTGGAATCCCAACAATGGACAGAGTGGAGAGATCGTCTACGAGTTGCCTACTACGTCACAATGGAGTTTCGAAGTGAGCTGGTGTCCGCGCAATCCCGGCATCCTCTCCACCGCTTCCTTCGATGGCCACGTGACCGTTAGTTCGTTGATGGGCGGCGGCTTTGTGCCACACGCTTCAGATAAGGTTGCCAGTTCTTTTGGCAGCGACGCCCAATCACCCCATTCGCCGACGGCTCCTGCCATTACTCCGTCGGCGGCTCCAGAACCTTTGAAAAAGCCGCCAAGATGGATGAGAAGACCCTGTGCAGCGTCCTTTGCGTTTGGCGGTCGTTTGGTGACATTTGGAACCTGCAAAGATGACTCCTCTACGAATCAAGTTACAATTAGTCAAGTAGTCACAGAAGAGCAGTTTCTGGAACGATCGAAGGAGTTAGAGAATGCTCTCCTCTCAAACAATCTCGTCGAATTCTGCGACAAAAAGATATATTTCTCATCCAGTGAAACCGAAAACACTCTTTGGAATTTCCTAAAGGTAAACTTTGACAAGGAGCCAAGGTTGCGATTTTTGGAGCTTTTAGGTTACCATCCACAGGAACTCGCAAAAAAGATCTCGAGCATTTCCTCCAAGAACAATAAGCTGAGTCTCACTGATGGCATGCCAGACTTTGATGCACAGGAATTAGCATCGAAAATGCAACTGCTTAACACCGGGgatgcaagtagtgtgaaaaGCGAAGGGGGTTTGGTCATCAGTGCTACTGCGTCACCAGCACCAGGTTCAGGAAGAAAGACTCCTGCGTCGGAACCAGACCCAGTAGCAGCTTTTGAAATGGTCGGAAATCTGAGCATGGACGATTCATTGAATGCAAGCATTTCGAATCTCGATGATCCTGGAAGGCCGAGCTCTCCACTCATCATTGCAACTGACGAAGATACTGATGGTCTTGTAAGTCAAGCATTGCTGACTGGTAATTTTGATGGTGCCGTGGATATATGTTTCAAGGCAAACCGAATGGCCGAAGCCCTTATCTTAGCAGTGGCCGGCGGCCCTGAATTATTTGCCAGAACACAGAAGAGATACTTGCACCAAGCTAGGAATTCAGTCTCAAAGCTCATTTCGTGTGTCGTTGGCCGTGACTGGCGCTCAATAGTCGAATCCTGCACCATTGACAACTGGAAAGAGGCTCTTGCTACCCTAGTTACCTACGGGCGTGCGGAGGAGTTCTTTGAGCTGTGTGACATGCTGGGACAGCGGCTTGAAAGCGAGGCTAGCAACTACAGCTCCGCGGCCATTTGTTACATATGCTCGGGCAATGTGGAGAGGCTTGTATCATGCGCCTCGATGTCGTTGAGCAAAGATGCCACACCATTAATGTTGCAGGATTTGATAGAAAAGGTCATGATTTTGAAGAAGGCAGTGGAGAGGGAGAAAAGACAGACTGCTACCATGTCGCATGCCTTCTTGGCCGACAAACTTAGCCAATACAGCAAGATTTTAGCATCTCAAGGCAGCTACGAAACTGCCATGGTTTACCTTTCAACAATTAGCGATCAGTCTGTTGCAGCGTTAAAAGATAGACTGCTTCAAGCCCAAGGACAGAAGGTTCTAGACTCCGCTCTGCCATTTGATAAGGTCCACATTCGTGCGTCACCAGCTcctcaacaacagcaacaacaacatcaacaacaacaacaacagcgaCAACTCtttcaacagcaacaacaacagcagcaacaattCCAACCAGTGCAGCAGAAACAGGTGTCGTCCCAAATGCAGCCTGGTTATGGATATCAGAACGCGTCACCAGTTCAAGCTAATCCCCCAGCTTCGAGTAATTTCTTCAACCCAACATCAGCTATCAACGCTTACCAAGGAATGTATCAGCCAAATCAGTCACAAGCATCTGCACCATCAACTGCAGCAACGCAGGCACCGTTGTACGCACCACCTTCTCAAATGCAACCAGCAGGTTTCCACCAATATTCCACTGAACCGCCACCACCCGCCTCCTCTGGCCAATTCCAATTGAACCAACCGCCGTCGTCAGCCGTTCCGCCAGTAAATTCTGCACCGCCCTTTGCGCCTGGCGTGTCTGGCGGCAATGCCCCTCCGCAAGCTCATTTTAACCAATATGGTGGTCAGGGATTTGGGATGTCTCAAGCTCAGATGGGCCCTCCACCCCCCAGTTCTTCATCGAATGCACAGCCACCAATGTCACTGAAGGCAGTGAAACAGGAGACTCATCATGCGCCGACGCAGCCACTAAACATGCCTCTATTCAACCCTGCTGCGCAGCAACCTGGTCAACATCAGCCTGATCAAAATCAGCAGGGTCAAGCTCCAGTCCCCGCTCAACTGGCGTTCCTGGTACGTTTATTCCAGGCAAAGTGCCCGCGAATGAACAAAAGGAAAAGATTATTCCAGAACCAGCTAAACAAGAAGCACTTAGGCCGCCAATTCCCGCAGAACACATGGGACTACAGCAAACATTCAACTTGA

Transcript

ENSXQXT00000020343

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12931 all species →	Sec16_C	Sec23-binding domain of Sec16	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF07575 all species →	Nucleopor_Nup85	Nup85 Nucleoporin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040251 all species →	Family	Protein transport protein SEC31-like	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR024298 all species →	Domain	Ancestral coatomer element 1, Sec16/Sec31	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011502 all species →	Family	Nucleoporin Nup85-like	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13923 all species →	SEC31-RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0007029 all species →	Biological Process	endoplasmic reticulum organization	Interproscan
GO:0030127 all species →	Cellular Component	COPII vesicle coat	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110 all species →	Biological Process	COPII-coated vesicle cargo loading	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14005	SEC31; protein transport protein SEC31	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.