Gene detail

Detailed information of ENSXQXP00000026963.1 in Sanderia malayensis

Genomic Location: not available for this species
NR annotation: no NCBI-NR hit recorded
Species Sanderia malayensis · all data for this species · gene families

Sequence

CDS

Transcript

ENSXQXT00000029622

TTATATAACAACTGATTGCTCTTTAAAATGTATATTTCTTATCAACCTTAAGCTGGAAAGACGCAGAGGTAACAAATACCAATAACAAATCTGAATTTTTACTGTTTTGcttgtttattattattgtcatcaCATTTTAAACATTTAGTTAAAAAACTATTAAATTGAGCTGAATTGCTCTAAAGCGCCATCTTCATATTGCCTTGGTTTCGAGTTATAATTTTCCCCACATCGAGACCAATCGATCTGTCAGTCATGCGGTGACTTTATTCTTTTCCTGAAGTTTTGCCACGAGTCGCATGCTGAAAACCGACAAGAAGGTTAGAACAAGAACTAAAGACAACTCGATATACCTTTGTAGAAAAGCGCAAGAAAACGTGTTCAGAATGGGCGAAGATGATACCAAAGAAATGCCTCCACTAACGTGGGAAACAGTGCCCAATTCCAAGCAAGCTATCCGCGAGAAAATCTGGAATTATATCGACGATAATAATTTTGCCAATTTCCCCCAGCCCGTCGCAAACCGAATCCCAAATGTCAAAGATGTCGACGTTGCCGCTGAGAAGATCCAGGGCCTAAAGGTTTTCCAGAACGCGAAAGTCGTCAAGGTCAATCCCGATAAGCCGCAAGAAGCAGTGAGGTACTACACCCTTTTGGAAGAGAAAGAATTGCTTGTGCCGACAACAAGACTGAAGTCGGGCCTTTTCAACAAGATTGTGCCCCCATCCCAAAGTGAGGAGGACCTGAGAAAATGTGCCACTTCCCAAGGCGTCAGATATCACAGACAGCCACTGGAGTTCGATGCTGATATCAAAATTGACGTCATGTTTACTGGTAGTGTTGCAGTATCCAAGAAAGGCTACAGGCTAGGTAGAGGTCAAGGCTTTGAAGATTTGGAATATGCAATGATGAGGGACATGGGTGTGGTTGATGAAAGTACACCAATCATAACTACTGTACAAGACTGCCAGATTGTAGATATTCCAGATGAGATTATGGAAGAACATGACTTTGATgTTGACTTCATTCTCACGCCAACACAACTGATAGAATGTAGTGGAGGACGACGAAAGCCTAAGGGAATTGTATGGTCCAATCTGACAAGGTTGAACCTCAGGAAGCTGCCCGTGTTGAGAAAGCTGAGACAGAAGGCAAAAGATGATGGCGTTGACGTCACTCTGAAACCTTCAATGAGAAGAGAGAGAAGACCAGCTAAAGAGGATGGAGAAGAACATGAAGAGGGAGAGGAATTTTATGGAGAAGGTGGCAGAAGAGGTGGTAATCAGGGCCAAAGGGGGAGGAGAACAAGAAGAGGATCTGGAAGACGAGGAAGCAGatcaagaagaagacaaagggAAGATCATTCAGGTGATGAATCAAAGGAAAATGCCAGTGAACAACATGaacatggggatgaaagtgAAGAGAGGCATGAAAGGTCAGAAAGAGGAAGAGGCAGAGGTCGTGGAAGAGGCAGGGGGCGTGGAAGAGGCCGTGGTGGCAGAAGAGGTCGCTATAGTGGTGGAAGAGGCTACTACCGGGGAAGAACTTCTGAAAGTGGTGGCAGACCTGATCTTGATCCTGCTCTATACATTGGAGGAATTGGTGAAGATGTCAGGGTGAGTTTGCTGAAGAGTATTATTCGAGAAAAGGATGTCCAACCCATTCAAGTGATGTGGAGAGGCAAGAAAGGTTATGCATTCTTGGTATTTAAAGATCTAGAAACAGCATCCGATGCCTTGACCAAGCTCAATGGATTGAAATATGAAGAGACGGATCTTACCGTAAAGATGTCCAATAAATTCGCACCGGCAGAAGAAGCTGAGGAGAAACAATAAGATAGTCACTTCACTGTTATAATTGTTGTTTATCAAATAATTATTGTGTTTCAGCCTTCAATTATCGAACATGTGATTCAAAGGTTGCAGTTCTGAATTTCTAAGCTTAGAAAGATTTTTGCTAACTTTTTAACAATTGATTATGTTTTGTGACGACACACATGATATCCGGAGAGGAATATGGGTGGTTTAATTCTTTCATGAATTGGTTTATTCAATTCTCAATGTGTACAGTTGTGTTGTATATAGGTAATTGAGTGAGTCAATAAACTGCCTATGCTTCTTTTCGGATTTGAGTGCATAGTTTGAAAACATTAATAAGCAGATATAAACTATTTTAATATCTCCATAGCTCTGTCAAAGCTCTTGTGCTAGCATTTTTGCTTGAATATTTCATAATTTTATCCCTCTgattttattgatatttttataTCATCTGATATTTGGGTTTTATATTTGATGTTGAAAATCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01812 all species →	5-FTHF_cyc-lig	5-formyltetrahydrofolate cyclo-ligase family	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024185 all species →	Homologous_superfamily	5-formyltetrahydrofolate cyclo-ligase-like domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR002698 all species →	Family	5-formyltetrahydrofolate cyclo-ligase	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13017 all species →	5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24991	MTHFSD; methenyltetrahydrofolate synthase domain-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.