Gene detail

Detailed information of ENSXQXP00000028331.1 in Sanderia malayensis

Genomic Location: ScYm1zk_876:2865404...2871392
NR annotation: no NCBI-NR hit recorded
Species Sanderia malayensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSXQXT00000031086

ATGCCGAGAACTAAAGATGTAAAAGCATTTGGTCTTCCAACAGCTGACAAAATAAGGTTGTTATTAAAGGCAGCTGAAAAGGGGAATATTAATGATATTGTAAAGTTATTGGAAAATGATATTGAGACACAATCAACAACTTATATTGAACAAAGCGAATTAGGAATTGATTCTTGCGATGATGTTGGCTTAACGGCACTTCATATTGCATCGACAAACGGCCACGAAAATGTGGTTCGATTCTTATTAACACGTGGTGCATCACTTGACATGAAGTGTCGCATTGGTTGGACACCACTGATGTTAGCTGCCTATTATGGACATACGAATGTTGTTGTACTTTTAGCACAGAACAAAGCGAATGTCAATTCGTCGAATTTAATGGGAGCAACGCCGCTAGTCTGCGCATGTCGCTGTGGACATCATGACGTCATATCCGTTTTGCTTGAAAACGGAGCGAAAACCGAACAAACTGGTGAGCATTTTAATCCATATGCAACAACACCTTTGATAACAGCCGCACAACACGGACATCTGAAGATTGTAAAGATTCTAATTGAGAATGGTGCTGATATTAATTTCAAACATCCAGTTACTGGCTGGACGGCTTTAATGATTGCTTCATTGAATGGTCATCTTGATATTGTCAAAATTCTCGTCGAATCTGGTAGAGCCGATGTCAATATGACGAATGATGCTGGCCAAACTGCTTTAGATGTTGCTTTTCTTCattcaagaagaaatgttaaagTTTATTTGGAAAAGCGAACCTTGCACAAGCCGGAAAGCCAAGTGTCCAACCCATCGAGACCATCTATCATCGAAGCCGCATTCGAAGgGAACTACGAGAAAGCAAAGGAAATTCTGAAAGCAAACGACAAAGAAGTGAATGCACAAGaTGCAGATGGTGCCACACCTTTGATTTATGCAAGCATGAAAGGACATGCCAACATTGTTGGTTTGTTTATTGAAAAGAATGCTGATTTGAATATTCAAGATAAAGTCAACGAATGGACGGCATTAATGCAAGCAACATGCAATGGACATGTTAAATGTATCAATCTTTTGCTCAAAGCTGGTGCAGATATCAATTTAAAAGACAGCAAATCTCTGACAGTATTTGATCTCGCAACAACTGTTGGAAACCCTGAAATTATTCGTATTTTGGCAAGAAAAGCATTAGATATTGGATCTAGCTTTGTGAACACTGACGAATTAAACAGTTTTTCTGTCGGTGAGAAGGCTGAGAGcgAACAAAAAGGCTCTGTTATGTCGTGGCTATCGAAGATGTCTGGAAAAATGCAACCTTGGAAAACATCTCGAAACTCATTTCCCACCACTCGAATTATACCGCATCCCCCAAATGGACTTGGCAGCTCAGTTGTCAATGAAAACTCAGATCCACAAGCTCTTGTTGACACTTATTCATTGCGATCATCAAGTTCTATTCTATCAGTTCTCGATGCTAATAAAGGTTCCAGAGAAAAACCAAAAATAGCATTGGTATTTCCACAAGCAAAACTACCTGATGATGTCGTGGCACCGATCTTGTCTCCATTTGCTCGAAGGACAAGCTTTGAACTGCCAAAAATGCCAAAGGACTCAAAGTTTTCAAACAGTGGGGGAACTGATATATCACCACAATCTGCAATACCAATGCTTCAAATTAATGGACTGTCATATAAGAATACTATCAGTGATCTTGATTGGATCAATAACTCAGATAGCAGTAGTTCAGGAAATAGTATAATCCTAAGGCAATCTGGATTTGGTAGATTAACAAACAGAGCCCAGGTTTCGCAATCCGCTCCATTCAATGCCGATTCACCTGATTCACCATTGTCTTCAATGACGTCAACTAATTCATTCTTCACGTCTGTCAGTAGACAAAATGGTCGGCCAAAGATGCCTTCTGTATCCAATGGCAACTTGAAACGGCAAGTGAAGGCATTCAATCCTGAAACCAACAACACATATGGTAACCACATGAAGTCCCGTATTGCCAAGCATACATCAAGTAATACAAGTTCTGTGATTTCAGTCAGCACACATCACAGTGCACCAGTGAAGCCATCAATAGTACCCAGACCTCCTACTACAGAGCGTCATCATTCTATTTTTCCTACAATTAATCCCCAACACGAGAGATTGTTTTCACCATCTCATTACCTTAATtctgaagGTGATGTATTAACAATGCTGGAGAGATTATCATTGGAAAAATACAGCACGAACTTTGAAGAAGAAGAGATTGATATGGAAgcatttcttacaatgaacGATGGTGACTTGCAATCGCTTGGCATCAAGCAGCTGACACATCGCAATCAAATACTTCGCGCCATTCGAGAACTAAATGCTGAAAAGGGCAAAGAGAAAGATCAAACTCAAAGTTTTACCCAACCAATTCAACACAGAACAGGAGTAAAACAAGCTCGCGGGTCAATTGCTTCAGCTCCGGGAAATTTGAATTATAATTCTTATCGAGCTACGAGCAAATTAAGAAGGTGA

Transcript

ENSXQXT00000031086

atgGCTTTTAAAGGCATTTCTATGACTTTTACCAGTTGTGTGAGATTCAAGTCGGAAAGGAAATTATGAAGCTTGCATTTCAAAACGGTTTTGTAATACATTTTGCTGTTTCATTTGCCTATCGTTCTTCGTCTGAGCGTGCTGCTGTTGGCTTGGCCTAAGTCGATTATACATTTTTTCACCATGTAATTATGATGGAAGGAGTTACTAACGTGAAAGAACAGTAATTAGCATTGGCTGTACTGTTATGGTGGTGTTTGAGATTCTAAACAAGCAATGAAACAGAAAGTTAAATAATCATGCCGAGAACTAAAGATGTAAAAGCATTTGGTCTTCCAACAGCTGACAAAATAAGGTTGTTATTAAAGGCAGCTGAAAAGGGGAATATTAATGATATTGTAAAGTTATTGGAAAATGATATTGAGACACAATCAACAACTTATATTGAACAAAGCGAATTAGGAATTGATTCTTGCGATGATGTTGGCTTAACGGCACTTCATATTGCATCGACAAACGGCCACGAAAATGTGGTTCGATTCTTATTAACACGTGGTGCATCACTTGACATGAAGTGTCGCATTGGTTGGACACCACTGATGTTAGCTGCCTATTATGGACATACGAATGTTGTTGTACTTTTAGCACAGAACAAAGCGAATGTCAATTCGTCGAATTTAATGGGAGCAACGCCGCTAGTCTGCGCATGTCGCTGTGGACATCATGACGTCATATCCGTTTTGCTTGAAAACGGAGCGAAAACCGAACAAACTGGTGAGCATTTTAATCCATATGCAACAACACCTTTGATAACAGCCGCACAACACGGACATCTGAAGATTGTAAAGATTCTAATTGAGAATGGTGCTGATATTAATTTCAAACATCCAGTTACTGGCTGGACGGCTTTAATGATTGCTTCATTGAATGGTCATCTTGATATTGTCAAAATTCTCGTCGAATCTGGTAGAGCCGATGTCAATATGACGAATGATGCTGGCCAAACTGCTTTAGATGTTGCTTTTCTTCattcaagaagaaatgttaaagTTTATTTGGAAAAGCGAACCTTGCACAAGCCGGAAAGCCAAGTGTCCAACCCATCGAGACCATCTATCATCGAAGCCGCATTCGAAGgGAACTACGAGAAAGCAAAGGAAATTCTGAAAGCAAACGACAAAGAAGTGAATGCACAAGaTGCAGATGGTGCCACACCTTTGATTTATGCAAGCATGAAAGGACATGCCAACATTGTTGGTTTGTTTATTGAAAAGAATGCTGATTTGAATATTCAAGATAAAGTCAACGAATGGACGGCATTAATGCAAGCAACATGCAATGGACATGTTAAATGTATCAATCTTTTGCTCAAAGCTGGTGCAGATATCAATTTAAAAGACAGCAAATCTCTGACAGTATTTGATCTCGCAACAACTGTTGGAAACCCTGAAATTATTCGTATTTTGGCAAGAAAAGCATTAGATATTGGATCTAGCTTTGTGAACACTGACGAATTAAACAGTTTTTCTGTCGGTGAGAAGGCTGAGAGcgAACAAAAAGGCTCTGTTATGTCGTGGCTATCGAAGATGTCTGGAAAAATGCAACCTTGGAAAACATCTCGAAACTCATTTCCCACCACTCGAATTATACCGCATCCCCCAAATGGACTTGGCAGCTCAGTTGTCAATGAAAACTCAGATCCACAAGCTCTTGTTGACACTTATTCATTGCGATCATCAAGTTCTATTCTATCAGTTCTCGATGCTAATAAAGGTTCCAGAGAAAAACCAAAAATAGCATTGGTATTTCCACAAGCAAAACTACCTGATGATGTCGTGGCACCGATCTTGTCTCCATTTGCTCGAAGGACAAGCTTTGAACTGCCAAAAATGCCAAAGGACTCAAAGTTTTCAAACAGTGGGGGAACTGATATATCACCACAATCTGCAATACCAATGCTTCAAATTAATGGACTGTCATATAAGAATACTATCAGTGATCTTGATTGGATCAATAACTCAGATAGCAGTAGTTCAGGAAATAGTATAATCCTAAGGCAATCTGGATTTGGTAGATTAACAAACAGAGCCCAGGTTTCGCAATCCGCTCCATTCAATGCCGATTCACCTGATTCACCATTGTCTTCAATGACGTCAACTAATTCATTCTTCACGTCTGTCAGTAGACAAAATGGTCGGCCAAAGATGCCTTCTGTATCCAATGGCAACTTGAAACGGCAAGTGAAGGCATTCAATCCTGAAACCAACAACACATATGGTAACCACATGAAGTCCCGTATTGCCAAGCATACATCAAGTAATACAAGTTCTGTGATTTCAGTCAGCACACATCACAGTGCACCAGTGAAGCCATCAATAGTACCCAGACCTCCTACTACAGAGCGTCATCATTCTATTTTTCCTACAATTAATCCCCAACACGAGAGATTGTTTTCACCATCTCATTACCTTAATtctgaagGTGATGTATTAACAATGCTGGAGAGATTATCATTGGAAAAATACAGCACGAACTTTGAAGAAGAAGAGATTGATATGGAAgcatttcttacaatgaacGATGGTGACTTGCAATCGCTTGGCATCAAGCAGCTGACACATCGCAATCAAATACTTCGCGCCATTCGAGAACTAAATGCTGAAAAGGGCAAAGAGAAAGATCAAACTCAAAGTTTTACCCAACCAATTCAACACAGAACAGGAGTAAAACAAGCTCGCGGGTCAATTGCTTCAGCTCCGGGAAATTTGAATTATAATTCTTATCGAGCTACGAGCAAATTAAGAAGGTGATGCCAAATTCCACCTGCCGATATGACCATAGTCAACAGAAAGCTGTTTTTCTATTCACTATGATATGAATCGAAATTATATCGTTCTTTATATTATATAATTATTGTACCAGTTAGTATCGTAATTTGACCAAATATTATATGAATATTTATTATCGGGAAATTTATTTGCTACGTATTTTTTAGATTACATTGTTTGTTGTTAAAGAATTTTAGAGCAAGATTTTGTAGATATTCATGAGATGGTAAGTTGTTTTAAATAATTGTTTATTATCTTTTAAGTGTATTTGTTGACTTATTTGGACAGCTggaacatttttcatttttagttgCCTTTTTTATGACAGTCTGATatatattaattattattattattactatgaAGCATAAGAGCACAGTTGGCATAAATCCAATAAATGAAATGTTCCTATGATAGAAAAAATAGAATCATCATTTCTGTTGATCACATTGGGTCAGTTGGATCTTGGGGTCCAATAAATAAGAGCAAGTTCGAAGACAATGTCCCTGATTTTGTAAGACACCATTATGATGAAATTATCATAACTTTGTGTGAATTTTCGAGAGCTTCCATATTGTCACGTGATTACATAGCCGACTACATCCATCGACACAAACGAAGAAAGGTAGGCCGTGTGAAATTTCATCAAAACCAAGAACATATTATTTTTAACGAGCACAAATCAGCATTGAAGTAGAAAACTTGTGGACTACACGATGCTATTAGTATTGCCGAAAGTGTATTTAtactgaatgttaatttaaAATGTTATATTG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003253 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24183 all species →	FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0051091 all species →	Biological Process	positive regulation of DNA-binding transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21415	ANKS6; ankyrin repeat and SAM domain-containing protein 6	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.