Gene detail

Detailed information of ENSYDOP00000001867.1 in Millepora dichotoma

Genomic Location: :...
NR annotation: XP_047126027.1, nuclear pore complex protein Nup98-Nup96 isoform X3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSYDOT00000001944

AGCTTTGGATCTACCACACCAGCTACTGGTGGGCTTTTTGGTGGAACATCAACAGGCACAAGTCTTTTTGGTAGTAAAACTACTCAAGCAACAACAGGATTTGGTGGTTTCGGTACGTCAACTGGCACCTCAGGCGGTTTGTTTGGTGGATCAGGTACTAGCTTGTTTCAAACGCCTCAGGCAAGCAGTGGCTTCGGAACAAAAACCAGTGGTTTTGGAGTTACAAGTCAAGAGCAAACTCAGAAGAGTGGTATCACAATGACAGTAAAGACACAGAATCAGTGTATCACAGTCATGGATGCATATAAAGAAAAATCACTTGAAGTAGGTTTTGGTTCTACATCAACCAGTGGTGGGTTATTTGGTCAAAACACTGGTGGTGGCCTATTTGGCGCCAAAACTACCCAGTCAATATTTGGTGGGACAAACACGTCCTCATCAACAGGTTTTGGAGGATTTGGTGGAACAAGTGGTGGATTATTTGGAGGCACAAGCTCAACTGGAACAAGTGGTGGATTGTTTGCTGCTTCAAAACCAACCTTTGGAGGATTTGGTGCGAGTTCAGGGACAGGTTTTGGTACaagtaatactttttcatttggTAATGCTGCATCATCAGGCGGTGGTCTATTTGGTTCAACGTCAAAACCTGGCTTTACATTTGGTGGTGGAAATACTGGTTTTGGAACATCAACTAGTAGTTTTGGTGGATTTGGAGCAACAACATCCTCTTCTGGCGGGCTGTTTGGCAATACATCGTCTAGTGGTTTATTTGGAAGCAAAACAGGTTTTGGAACAACTGGATTTGGCGGAACAAGCACTGGTGGAACATCTTTGTTTGGTGGCGCTGGATTTGGAGGCAGTGGAACCTCAGGTTTTGGCGCTATGGGAAGTGCAAATACTGGTTTGTCACTAGGTGCTGGTACTTTAGGTGGGCTGTCTAACATtgatcaGAGTACATTAACAGCGTTTCAACAGCAACAAATGATACAGAAGCAACTAAAAGCTATCGCAAATACACCATTCGGAGATTCAGCGTTATTCAGAAATCTGGCTGTAAGTTTCCATTATACcgattattattttatttttacttctttaaatcAGCATGTATTAGCACGACCAGTTTCCAGAGTAAAACCACGACAAGTGTCATCACCATCTCTGGGGAAATCTCGATTATTTGAAGGACTGGATAATGAAGTTGATTTTAGCCCCCACCCATTAGTTCCACGAAGAAATATCAAGAAGCTCGTCATTAAAGACAAATCAAATCCGGTAATTATGCATCAGTTTTGTTTTCGGTTTTGTGATAATGACGATCTCGTGTCTCCATCACCGGATGTCATTAAAACTAAACCTGCAAAACAAAATGGCATTGACGAAAACACGCCAAAATCGGGgaaattatttaataacactaTGTCAGAATTGAATGATGATAGTAAAACGCCAATTATGAAAAAGATCAATAATTATGTATTGACCCCTGAGTCGAACACCCCAGATGAAGTAGGGAAAAGGGAACCTGTTGTTAAATTCAAAGAAGATAGCGAAGAGCTTCCTTTTTTGTCTTCATTGACTACTCTTCTTGACTTTAGACCTGAGTACTATACGCGACCTACCGTGGCCACGTTGGACAGGCAAGTGAATGAGAACCATTGTATCGTACGTGATTTCACAGTTGGCAGAGAGGGTTATGGTGAAGTGAAGTTTTTAGGAAATACCGACGTTTATGGATTGAATCTAGATAAAATAGtctttttccgGCGACGTGAGGTGGAGGTCTATCCTGAcgattacttaaacaaaccagaaGTTGGTGATGATTTAAACAAACCAGCGGAAATAACTTTGTTAAAAGTTTGGCCTAACGATAAATCCAATCATACTCCAGTAAAGTCTCCAGAAAGATTGAAAGCCGCTGGTTTCATCGACAGGATCGAAGAAAAAACTTTAGCCATGGATGCTGTCTTTATTGATTACAGACCAAAGGAAGGGGCGTGGGTGTTCAAGGTCAATCATTTTACGCGATATGGAATACAAGAACAGTATATTAATGACGCTGCTAATCAGCAAGGTCAAAGAGATATTTTGAAGAGGAATgttcaaaagaagcagctacAAGAGTTCTCTATGGAGTCCGATCATTTTCTTGGTTGTaagaataaagtaatttttatcaTAGGGGGTGTCAATGAGGAGTTTTTACCATTGTCTCATCAAATTGGACACATCGCACGTGTGCAACCTTTCAACCTTCAAGGAATGAAGACTTCCATTCTTGATGACGATGATAACGAAGATATACCTACCCCAACCACATTTGCGAAGAGAAAGCAAGTTTTCAGCAATAAATCGATATTTGGTAGCACTTATATAGAGCAGAATCAAACAGATAAACCTTCTTCCCCTTTTCCAAAACTTGATTTATCTTCAAATGTTCCGCAAAAgcagaatcatttaaatgctaccattttcaaaaatgtaaccaCTAGTGAAAattttttgcaaattttaattagCAGTAATACTGAGACCATAGTGTTCATTAAgtgtaaaacatttgaaatggttAAATATGAGCAATCTTTATTATTTGGGAGACAAAGCTGCCTCGCAGATGCTAGTTTAACACATGGTAGACAATTCCGTGTCTCGTGGAATAGTCAGCTGCGATTCCTTCACAGTGGATTAAAAGTTGGTTCCTGGACTGCAGATACAACTAAACTCAATACAAGtatatttgattcaaattttgtatcccctATTTCAACTTTTGGGTTAGCAAATAATGTTGTCAATGAGGAACAGTTAAATGTCGATAGCAATCCAGGCATGAAACAGTTTATTGAGAGCTGCATGGACATTTCTTTAAAGCACACGACATTTGAATCAACTGACGAGTCTGTACTTAAAGTGCCAGTACTTGACTCCGGACTCAATGTGATAGCAGAGTATGCTAAATTAGCACAAGGATTTATGAATGCTGCAACAGcagttttacatatttttctatgttACTTATTGGATGCAAGTGGAACCTGGGCGCAAAACAAGgATGATGGtcatttatcaacaatttttaccTTGCTTTCATCGAAGCAAATTCGAGACGCGGGTCAAGTAGCACGTGATAATAATGAAACACGGTTGGCATTTTTAATAGCTCAGGTAGCTGGTGACCACCATTTGAAACATTACATGCGGAGTCAGTTAACGCAGTGGGAGGAGGGACAAATTGACGAATTTATGAATGTCAACCGTCTGAAGATCTACGTTTTGTTATCGGGCATGATGGTGTGGAAGTCAGCGAAGAATTATATTAACTTGTGTGAAGGCTTGGATTGGAAAAGAGCATTTGCGTTGCATATATGGTTTTACTGCTCACCCACAGCATCAATATATGACGCCTTTATTGAATATCAGAGTTCTTTTAAGgGTACGGAAACCTACGAGCCCTACTCCTCCTACCCCGCCCCAAGTTACAAGGAAGAAGAGAGTGATGCAAGTCAACGATCGAATGATCATAAAACTAAAGATCTGTGTTACCATTTGCTTGCCTTATATTGCAAACGCCCTCACTCTTTAGAAAAGTTGTTGACGTCCAAAACATATTCTTCAAATCCATTAGATGCTCATTTGAGCTGGCACATACATCAGGTTTTTGAAGAGCTTGGATACAACCATATGAAAGAAGACCGTCATGCGTTACTTCAGCAGAGCTATGCCACACAGTTGGAAAGTGTCGGTTTGTGGCACTGGGGAGTTTTTGTACTGATGCATATGAAAGACCCAGGAAGGCGAGAATTCTGTGTAAAGGACCTGCTGAGCAGATACTGTCGTGTTAATGATGAACCAGACAACATAGACTTCACAGCAGAAGAACGGAAGCTAGCAGAAGAGTTTCATGTTCCGAAGCAATGGGTTCATCAAGCGAAGGCGTTACATGCAAAATATATGGGGCGTCATTATGAAGAGGCATTACATTTAATACGAGCAGATTTGTGGAACGATGCTCATGTAGTTATCATGCAACACGTCGCTGTTGATGCCATTATTGAAGAGGAATACGATCTGCTGAAAAATCTGTTAATTGATATCAGTCTACCTGAAAGATGTTGCACGGTCAAACACTGGAAAATCGGAGGCCAGATATTTATGGATTATATTCTGTTGAACGAAAAGTTGGATAGCATACAAAATAATCGGTTGCACATCACCAACTACCACTTGGAAGACATGGAAGCAGAGGTCGCCTCTTTGATCAACAGGATAAGCATTATGGACGTAAAAACAGCAAGGGACAGGCTTTGTCAATCAGAAATGGCACGTACTTGTTCAAACATGCTCAAGATTATCTTCTCATGTATGaaatcgGATGATGAAAGTTTTGACGATGAAACGCCAAGTTGGTTATCAGCCAAAGTTGCACCATATGTGGCAGAATTACCATTACCCCCTGATTATTATTTGAAAGAGTTGCGGGAAGTACTTGCTAATTATATGCAAGAGTTAAACGCAGAAGGAGTatag

Transcript

ENSYDOT00000001944

Protein

Uniprot

Uniprot term	Description
Q9VCH5	Nuclear pore complex protein Nup98-Nup96 OS=Drosophila melanogaster OX=7227 GN=Nup98-96 PE=1 SV=3
Q8LLD0	Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana OX=3702 GN=NUP96 PE=1 SV=1
G5EEH9	Nuclear pore complex protein Nup98-Nup96 OS=Caenorhabditis elegans OX=6239 GN=npp-10 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21240	Nup98_GLEBS	Nup98, Gle2-binding sequence	Domain	Interproscan
PF04096	Nucleoporin2	Nucleoporin autopeptidase	Family	Interproscan
PF12110	Nup96	Nuclear protein 96	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007230	Domain	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain	Interproscan
IPR037665	Family	Nucleoporin peptidase S59-like	Interproscan
IPR036903	Homologous_superfamily	Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily	Interproscan
IPR021967	Domain	Nuclear pore complex protein NUP96, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23198	NUCLEOPORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006913	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0000973	Biological Process	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0008139	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0034398	Biological Process	telomere tethering at nuclear periphery	Interproscan
GO:0044614	Cellular Component	nuclear pore cytoplasmic filaments	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14297	NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96	-	Chromosome and associated proteins	ko03036	deepkoala