Gene detail

Detailed information of ENSYDOP00000002082.1 in Millepora dichotoma

Genomic Location: :...
NR annotation: XP_047140937.1, KH domain-containing, RNA-binding, signal transduction-associated protein 2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSYDOT00000002167

TCCACATTTACATATCATCTCTCTTCCAGcggaaaattttgataagtgTTCCCATCCTCTTGCACTCagtctttatttctttatcatgtcaGATAAATACTTGCAAGAATTGTTGGAAGAAAAAGACTTGCTAGATGCAAACATATTCATTCATTCAATTCGATTAATAGAAGATGAAATTCTTCAAGTATCAAAGAGCGGCGAAAACAGAGAAATGAAGGAGGAAGGAGGGGAGCCTTCACACAAGAAGACAAAATACAAATCGTATACAGGGGCAGTGGTCACTGAAGACACAGTTAAGCTAAGTGAAAAGGTCATTGTTCCAGTAAAAGAATATCCTAAGTTCAATTTTGTTGGGAAGCTTCTTGGTCCCAGGGGAAACACATTGAAACGTCTTCAACAGGCCACTCGAACCAGAATGTCAATATTGGGCCAAGGCTCAACAAGAGATAAAGAGAAGgaAGAAGATTTAAGGAATTCAGATGACCCCAAATATGAACACCTAAAAGAGCCGCTGCATGTGTTGATTGAAGTGGAAGCACCCAGGAGTGAAGCCCATGCGAGACTGGCGGCTGCTTTGGCAGAGATCAAAAAGTATATGGTCCCAGAAAATGATGAAATCAGGCAGGAACAAATGCGAGAAATGGCTTTGCTAAACAGTTTTGACAAAAACCCAGAGGCAGCAGCCCTAGCCACTACAACAATTCTAGGAGGAAGAGGACGTGGGTTAGCTGCTCCAATTGTTCGTGTGGGAATTCCACCACCAGGAGCAATCATACTGAATGGGCAAGCACCAGCCACTGTTGCTTTGAGAGGAAGAGCACCAAGGGTGTCAGGTAGCAGAGGAAGGTCTTCAGTTCCAAGGCATGCAGCACAAGCACCAGAACCTTATACAGCTTATGATGCATATGATTCGACTTACGATGCTGCATATGAAGGCTACCCGGACTCAGGGGAGGCAGTGTATTATGAATACCCAGATGAATATAGCGGTGGTTATAATGAAAGACATAAACGAAACCGCCCCGCAGAAGAAACTAATAATGGGTCCAAAAATTATAGAATCCGTACACGCACGGAACACTACCGGAGCTCTGTAGAAGACCCTTACCGAAAAGCGTCAGCATGGTAAAATAATGAGCGTTAAACTACTAACTGTAACCAGTTAAAGACCGTAACCAGTTAAAGATGCTAAGAGTGCTTAACAAATAACCTAGTAATTCGTGAGCGGCACTGGGATCgtcaacttttaaaacttaaaaacttactttgaaaccgctgtctgtaaatattttatagaatgaTTTTCTTATATATCATTAATACCAAAGATTtcctgttttttctatatttttaacaaagaaagttcaTGATAtgttgtaaattattttaatagtgtttttatAACAGGGTTGTTCCGATTTGATTGAATGTTAAGTGGAAGATGGCAATTAAGGATTTAATCACTGAGTCTCGTCAACATGTTCCCTTTTCACCAAACGAATGCAGCGTCTCAGAAATTAACccagataaaattattttcaagtcttaatatttgtttaatttaaaaaaaaacaacaatgcaATAGTAAGTCGTATCGCAGAcataaaatgttttctcaaaatatttttccaaacgTTCCCGCCAGAATTTTTCAGTGATATCATTGGTGCTGGAAACAAATCAGTTTGATCGAAGCGTGATCGTCGGTGAAAGATCGTGcaaaaacttttactaaaagtgCTGACCTTATGAGAATATtgcaagaatttaaaaattttatgtaaacagTACTTAAATTCACCAAACTAATAAAATGACTTTGATGTAAATAACTTAGCATATTGTTACAAAGCCAGCAGGCCTTTAAACGAAACCGTATTTCTGAAACATCAACTCAAAAAACTGCTGTAGGGAGATCATGCTTAGAACGCCTTGTGCAAAGTTATCTATTCGTCCTGTATCACTCTTTCGTTTGTTCAGCAAATCATCAATGTTGACCTCCCATTAGTTTTCGATTAAATAGTTAAAAGTAATAACTTCCTTGATATATGCATTGCATATAACTCACTTTCCTGCATTAATATCATATTTAGACGGAACTGgggtaaaattaaatttgtatgCTAA

Protein

Uniprot

Uniprot term	Description
Q0VFL3	KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis OX=8364 GN=khdrbs2 PE=2 SV=1
Q08BJ2	KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio OX=7955 GN=khdrbs2 PE=2 SV=1
Q9WU01	KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus OX=10090 GN=Khdrbs2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR045071	Family	KH domain-containing BBP-like	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004087	Domain	K Homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11208	RNA-BINDING PROTEIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0048024	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14942	KHDRBS3, SLM2; KH domain-containing, RNA-binding, signal transduction-associated protein 3	-	Spliceosome	ko03041	deepkoala