Gene detail

Detailed information of ENSYDOP00000002600.1 in Millepora dichotoma

Genomic Location: :...
NR annotation: XP_002153804.2, RNA-binding protein 3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSYDOT00000002708

aaatgtcTAACCCAGTTCCAGGGAAGATCTTTATCGGGGGTATGCCATACACCATGACAGAAGATGACTTGAGGGCAGCATTTGAGAAATTTGGTGATGTCTCAGATTcaTTCATTGTGCGAGAGCGAGAAGATGAACGTGGAGTGAAAAAGtcaaaaggatatggattcattaCTTTCAAAGATCCTTCTAAAGCTGATGATGCAATACAAGCCATGCACCAGTCGACATTAGAAGGAAGAAAGATCACAGTAAACTTTGCTACAAAACCAACaaatggtggtggtggtgatcGTGGAGGCCGTGGAGGTGGTTTTGGTGGTAGAGGAGGAAGAGGTAGAGGACGAGGAGGTTTTGGAGGAAGAGGAAGAGGTGGCTATGGTGGTGGAATGAATAATGGTTATGGTGGATACCAAGGTGGTGGCAGTGGTGGAGGCTATGGTGGAAATCAGGGTCCTGGAGGTGGAGGCTATGGTGGCAATCAAGGCCCAGGAGGAGGTGGCTATGGCGGCAATCAAGGCCCAGGGGGCTATGGTGGCAACCAAGGTGGAGGTTATGGTGGAAGTCAAGGTGGGGGTGgcagtggtggtggtggtggctACGGAGGAAGCCAAGGTGGAGGTTATGGTGGAAACCAAAGTGGTGGAGGTGGTGGATATGGAGGAGGTTATGGAAGTAACCAAAGTGAAAGAGGTGGTTATGGCGGAAGTTACGGCAGCCAAAGTGGATCTGGAGGCTCCAGTGGATATGGTGGAGGTTATGGCAATCAGCAAAGTGGAGGACAAGGTGGGGGCCCACAAGGTGGACAAGGAGGATATCAACAGCAAGGACAATATGGGGCACAACCCAGTGCCTACAGTGGACCACCATCAAGTGGATATGGTGATCAAAGTTCACAAGGGCAATCGTACGGCCAGGGTGGCTCTTCAGGTTATGGGCAAGGAGGTTCATACTCATCAACTCCACAAACATCAACAGCAGGCTATGGAGGGGCATCCTATAACCAACCTGGTGGCTATGACCAACAAAGTGGTGCCACCAGCTACCCATCATACTCGCAACAACCTGCAGCATCAAGCGGATATGGTTCCACTTCATATTCGTCAGCAGGTTATGGAGGTGCAGGTGGACAGTCAGGTCAAAGCTGGCAATAACTGTCTGAATCGTGTGGATACAATTTACTGAAATACGATTGTCTGAGCAGTCTGGATTGtctggaatttttctgaactgtTTGGAAGTTTGGGAAAGTCTGAGAATTGCCTGAAATGAGTTTCTACATTCTCCAAAAGACTGATGAAGCATTCTCGTTACTGATGAAAAGTATgatatgaaaagattttatggTTGTGTATATTTCTGAGAGTAGGATATTAGTATATATGATTGAGGCCAAGTTTGCCATTCGTAAGAAACcagcatttgttttgttttgtgtttgcaCGATCCAATGTTAGCCaagtaactttttcagaaaaagaggCTACCCTAGGAGTTTGCTTTTAATCAATACCCGAAGCTTTTCCTCAGATTTTTTGTGCTGTTTCTGAAATATATCTGAGCTGTGTATCCAAGACACTTTAGGTTGTGTTAGCTTGCAAATAAATTTGTCATGTTACGATTCTGCTTAAATAGAGCTAAAACCTGCCAGTACCAATTTGCCTTGTCTCTTAACAATACTGGAAAGGATTTTTGAAAGTAGTATTATCAACATCTCTGTCTCGAGCAATACCACTGAAAAGTTTCCAATTTTACTGGTACTTTTTGAAAAGTAACCTTTGAAACATATTTATGGGTTTTATTCTTCTTTTATGGATTTTATAGGATTATGAATTTAAAACTGTAACATAATTATTTCTggcatgttttaaaaagttatacttgGTTTGGACGTCCATTTTGGATCTCCACCAATCGTATGGAAACATATGAATATTGCAACTGTGGTGGCACGGAACGACGATTCTGCaaatacatgtttttatttttgtatatcttATTAATGAGGAAAGATAAATTCAATACCAAGCTTTGATGTTTTAAATGGAATTTCATGTTTTATCCCGTACTTAAAACAAAGAGGCATTTTTTCGCATTTGGCCTAATATTGTTTCGCAGTAGCATTCTTGGGGAGTAcatttatctgaaataaa

Protein

Uniprot

Uniprot term	Description
Q03251	Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 SV=1
Q03250	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1
P49310	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052462	Family	Glycine-rich RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan