Gene detail

Detailed information of ENSYDOP00000009758.1 in Millepora dichotoma

Genomic Location: :...
NR annotation: XP_047140618.1, potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSYDOT00000010076

TCCAGAAGATCCAGATAATACGCCATTACATTTACAGGGAGACTTCCTGGAAGCAATGTTATTCCCACATTTAGATCCAGATAAAAAAACTAGTATTTACGGAATGAATCAGAGACGGGGATTTGGCATGACATTACTACAAAGGGGACAAACAACATCTGCTGATTTAATTAAAGAACTGTTCTGTCCGGCCCATACAttagttaatcaaaaattatttggtggTAAAAAAGGTGTAGATATTGAAAGAGAGCGCTCAAGAAATTCTGGTTATGTTATTCATCCATGCAGTAAATTAAGgcAATATTGGGATTTCATAGTAATGGTTATGCTTATCTTAAACATGTTCATTCTACCGCTCGATATTGCCTTTTTTACACACAGAAACCCACAGACTTGGCTATGGTTTCATATGGTTTCTGACTTTCTATGcataattgatattgttttaaattttcgaaCGGGCTATAGAGATAATGTTGAAAGTAGTGTTTTTGAGCTGGATAGTAAGAAGATAGCAATACActaCGTGAAGACATGGTTCTCCTTggattttttaagttctttgccACTTAACTTCATAATGATGGCAGCATTTGGCGAAGCTGAAGCTTTAAGTTTAGGATTAAAAGGAGCGTCAAGAGCGTTGAAGTTCCTGAAAGTAATGAAGttgttaaacttgttaaaactACTTCGACTTTCGAGAATTATGCGTGGAATCTCTCAGTATGAAGAGGTTTACTGTCTCACAGCAAGTCTTATGCGATATATCAAATTAGTGTGCATGATGCTTATGGTAGCGCACTGGAATGGCTGTCTACATTTCGTTGTACCAATGTTACAAGACTTTCCACCAGATTGTTGGGTAAAGTTATGTAGGCTACAAAACGAACCTTGGTACATTCAATATGGCTGGGCATTATTCAAAACCTTATCACATATGCTATGCATTGGTTATGGACGTTTTATACCTATGCTCCTTTCAGAAGCTATTATTACAATTTTCAGTATGGTAACTGGTGCAACATTTTACGCTCTTTTCATTGCTCATTCGATGGCTTATATTATACAAAATGATTCATCTAAAACCACGTATCAAGAGAAGTACCAGCAAATCCAGGAATACATGAATTATCGACAACTgccagataaaattaaaaaacgagTTGCCAATTATTACGAACATAAATACCATCAAGGAAGATTTTTTGATGAGGATAGAGTTCTATCAGAAGTATCTGTACCATTACGTGATGAAATCGTCAACCATACATGTCGAGATTTGATAAAGACTGTTCCGTTTCTAAGGGATGCTTCCCCGAACTTCACCACAGCTATGATAAATAGACtgaaatttgatgtatttttaagTGGTGATATTATTGTAAAGGAAGGCACAATTGGTGAAGAAATGTTCTATCTTCGGAAAGGGACAGTAGAAGTTACTTCTGATGGCGTGAAGTTATCTCATTTGACTGATGGGGGATATTTCGGAGAAATCTGTTTATTGACCCATTCGAGACGGACAGCTAGTGTTGTTGCTTTAAGCACTTGTGATGTATTCAAGTTAACCAAGCAAGATCTAGACAGCCTTTTGCTAGAATACCCAGATATGAAACCTGTTATTGAACATGCTGCAATCTCAAGAATTGTAAATACATGCCGTAAATGCAAATTTACCACCGATTCTGATGAAGATGATTTTCTTCACGAAAATGACTTAATCATGGCCACACGACGAACTTCAATAAACAAGTTTACCCATAATGCATTATTAAGTTTGCTAAATCAAAATGTTGATAAGCAAGAAACAGATAAAGATTATGATCTTTCTGAGTTAATGCAGATCGTTGTGGTCAAGCATAAGTATATACATAAAGATTGTAAATTAGTTACACCAATTAGAGAAGAAACAGAATTTTAGAGTATTACGTTAAGCATGGTTTTGTCATGCTACTATtaactaagaaaaaatgaaaaacatctcCAAGAAAAACGTTGCAAATAATATTGGctggaaaagaagaatttttagatGTAAGACTCTAAGCAGACTCTTAACTTTAAATGGACTTCACCACGGATGTCTTTATGGACATGCTTCTAAATGTTAGCAAACATCTGTTTTCGTGTGATTTTAAGGCAGGGTGATAAAGATGCCATTGTTAAACCACACAGCACACAATACTCACAAATGTGGGCTTTCTCTGGTACATTTACTTTTACCTTACtcatgttaactttttcatgtataatgttgaaaaatggtcaaacatgctttaaaaatcttacagtgagtttgaccatttttcaacattagtCATAATATGAAAGAATCTTTCCACCACCATACAGGGAGCAGTCACGTGATtcgcagagtaaatcaatggactggtttctttatgatacagacctccgtcatgaaagagttaatatgtcaaaaggacaaaaaatgcgGGGAATACCCAATACTGCCCTCATATGGAAACAAGTGCAACAGTAAACGTTATTCATATTAAGCATTCTgcaaaatgcttgaataaactttAAAATGCCTTGCTTGTTATATTACTATATATCAAGGCGAATTGACAAGATCAAGGCGAATTGACAAGCTGATTATCTTGCTAAAATtctaataattcaaatttaaatttcttgatctGTAA

Protein

Uniprot

Uniprot term	Description
Q9JKB0	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 OS=Rattus norvegicus OX=10116 GN=Hcn1 PE=2 SV=2
O88704	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 OS=Mus musculus OX=10090 GN=Hcn1 PE=1 SV=1
O60741	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 OS=Homo sapiens OX=9606 GN=HCN1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520	Ion_trans	Ion transport protein	Family	Interproscan
PF08412	Ion_trans_N	Ion transport protein N-terminal	Family	Interproscan
PF00027	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005821	Domain	Ion transport domain	Interproscan
IPR051413	Family	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel	Interproscan
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR013621	Domain	Ion transport N-terminal	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR018488	Conserved_site	Cyclic nucleotide-binding, conserved site	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45689	I[[H]] CHANNEL, ISOFORM E	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0003254	Biological Process	regulation of membrane depolarization	Interproscan
GO:0005249	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0035725	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0071805	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098855	Cellular Component	HCN channel complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04955	HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2	-	Ion channels	ko04040	deepkoala