Gene detail

Detailed information of ENSYDOP00000010484.1 in Millepora dichotoma

Genomic Location: not available for this species
NR annotation: XP_002156731.1, coatomer subunit epsilon [Hydra vulgaris]
Species abbreviation MDICH · all data for this species · gene families

Sequence

CDS

Transcript

ENSYDOT00000010812

aagtatttcTGAAACCTGACCTCGGGGTATGGAAATTTTCCATAACCAGGTGTTCCTGGTTACTACTAGCTAGCTAAAACTTCCCGATAAAATGGCTGTGAATGACGTGGATGAACTATTTGAAGTTAGGAACTCATTTTACATTGGGAATTTTCAACACTGCATCAATGAAGCGCAGACCCTAAATGTATCTTCATCAGACTTGAggattgaaaaagatgttttcttaTATAGAGCGTATATTGCCCAGGGGAAGACAAGTTTGGTGTTAGATGAAGTCAAATCTTCTTCTCCACAAGAAGTTCAAGCTGTGAGAATATTAGCTGATTATTTGCAAAATCCAGGGAAAAGGGAGACCATCCTGCAACAgttggagaaaaaattaaatggaagcGATTTCAGTGAATACTTTTTACTAATGGCAGCCAACATTTATATGCATGAACAGGATACAGATTCCGCATTAAGATGTTTATTTCAGTCATCAGCTTTGGAATGTGCGGCATTATCTGTACAAATATACATATTGATGGATAGGATAGATCTTGCAAAaactgaaGTTGCACGgatgcagAGTACTGATGAAGATGCAACTCTCACTCAGTTAGCGTTGGCGTGGTTTAATCTTGCGGTGaaaataacttgtgtaaaaatattgttaatcaAGGGTGGTGAAAAATGTCAGGAAGCAtacttcatatttcaagaattgGGAGATAAATATACACCAACTGTGATGTTGTTAAATGGTCAAGCAGCTTGTTATATGAGAATGGGAAAATTTGAAGATGCTGAAAGCACATTGCAGGAAGCATTAGAAAAGGATAGCAACCATCCTGAAACACTCATCAACATGGCAGTTATATCTCAGCATATAGGAAAAACACCtgaggtCAGTAATAGGTTTATATCACAACTGCGGGGTGGACATGCAGGTCATAGATTTACTAAGGAATTCCAAAGCAAGGAAGAAGATTTTAAGCGAATATGCGAAAGTTACACCGCTTCTATAAAAGCtcattaaatagttttgaattttaaatgaatataCTATTTATTACGAATTTATCTTGTTAGTATAATTTGGTTTTGCATGTCTCAGATGAATGTACCCTTCGTTTATCGTTTTATTTAATGCCAAAATTAGGGAATGATATAAAAGTTTGTCAGTTTGAGTTATTTAAGAGGATGTTTTTACATCCAGTGTTAACAATGATTAAATAGAACAATtcacattgtttttcaaaagattttgcaatattgtcTTCATCAGTAGATTACCATTATTCGTTTGGTAAGTGATGGTCTCCACTATTTGCTAGAAATGGCCTATATTCCTGCTGAAAACATTAGGGAGAGTAGGAGTGgattactttaaataaatttaaagttcaaatgaaatttgacattgattcttcaatatttaaatttgattatttaaaatgTGTAATATATACTTTTGCAAGATATTTTTCCAGCTTCTTTAAGTGTTTTTATTGGTCATTGTGCTGTTAGAAACTTTCAAGTACATCTAGATGGGCCCCTTTTGACTTACTTTCTTGATccaaatataatttgaaagaatgcCTTAGCAGGCATgctgcgaaaataattaatgtcaaaaattaacagtttcttatagatttttgaaatttattctccATTTTGACAGGCAGACTTCCTGAAATTTGAAGCACTAGGAGCACTTCAAACTCCTTCCAGAGGCAATAGTTATGGAGCTTGGTATTATACAAAATTGACATTTATGTTATTGTAATATTTTCCTGgagaaaatataaattcaaattgaTAAAGTAAATATACCAACAACAAAATTTGTGTAATAAGAACGATAGTCTCCATTTGTCTGGCTGTCATTAGATAATTTTGCACACATTATGTTTTAATAAGGGACAATGGTTGGAAAATTTTGGGACAAACATTTTATTCTTACTGAGTTAATGCAGTAATCTAATGAGGCATATCCAGAAATActacattaaatgaaaaaaaaaaaaaagac

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60445	Coatomer subunit epsilon OS=Cricetulus griseus OX=10029 GN=COPE PE=2 SV=2
O89079	Coatomer subunit epsilon OS=Mus musculus OX=10090 GN=Cope PE=1 SV=3
Q5RFR8	Coatomer subunit epsilon OS=Pongo abelii OX=9601 GN=COPE PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005637 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04733 all species →	Coatomer_E	Coatomer epsilon subunit	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006822 all species →	Family	Coatomer, epsilon subunit	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10805 all species →	COATOMER SUBUNIT EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17268	COPE; coatomer subunit epsilon	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.