Gene detail

Detailed information of ENSYDOP00000013719.1 in Millepora dichotoma

Genomic Location: not available for this species
NR annotation: XP_047122502.1, scm-like with four MBT domains protein 1 [Hydra vulgaris]
Species abbreviation MDICH · all data for this species · gene families

Sequence

CDS

ENSYDOT00000014132

ATGAAATTAGAAGTTCCTAACAAGGATTACAAAAACACATACTGGTTAGCCACAATTGTCACCAAAGCCTCCCCGCTAATACTTGTTCGTTACGAGGGTTTTCACGAAAGCAGCGAGTGCGACTTCTGGTGTAATACACTGACAGATGACATCCATCCAGTGGGTTGGTGTGCCAGAACAAAACATGCTCTAAAACCTCCAAAAGCTATACAGCACAAAGAGAAGAACTGGTatacttatttaataaaaaatctaacgGGTGCAAGAAAAGCCTCTGAAAATCTCTTCCTCAGGAAATCTCACCCTGCTCACTACCTGAGAGCAGGGCAATACGTGGAAGTCATTGATCAGTACAACCCAACTTGTTACTGGCTTGCAAGAATTAACGAAGTTTTCTCGGGGCGACTCTTCCTGCAATATGAAGGATGGGTTGACAAAAGTGGAGAGTTTTGGTGTTATTATCTAGACGAAAGTTTACGAGCAGTAGGTTATGGGATGAGACATGGGTTGACCCTCTACCCACCAAAAGGTTCTGGACCATTTTCACATGTCCAGTTCAATCAAATAACAGACAAGATTGTCACACACTCCAAACGAAGTGATAACAGTATCTTTAAAGCTTTATTTTCGGGATGGCGCAACCCAAAAGAGCACAAATTAAGCCTAGGCATGAAATTAGAAGCTGTACATCCACTAGATCCTACTAGCATTTGCGTAGCGTCGGTTGCACGGGTATTTGATGCACACCATTTCTTAGTGAAAATAGATGATTTGATCGCCACACAAGAAGAAATCGCCAATTGTTTCATTGCGCATAAAGGTTCTGCTGGAATATTTGAGATAGGCTTTTGCCACAAAAATGGACTCCCTTTGCAACAACCTAGAGGATATAACGGAAAATTTACGTGGGAAGGTTATTTAAAATATACGAAATCACTTGCCGCGGCTGACCTATTCATCCCAAGAATGGAAACATTCGACCAAAAACTTCTTGATGTTGGAATGAAACTTGAGGCGGTCGACCTCGAAAACAAGTCGAATATATGCGTATGTACAATATCACGAATTGTTGGCCCAAACATTTGGCTCAAAATTGATGGGGACACGCGAATTGAACAAATACACTCAATTACTTCTACCGATGTGTTTCCAGTAGGCTGGTGCGAATCGACTGGACATGAGTTACAGTGGCCTCGCCTGAACACACTTGAGCAGAAAAACAGAATATCAAGTTTGAGACATACTGCAACACGTAAAAATCGACTAGAAGTTCTACGAAAGGGTAAACTTCGTGAAAAAAGCAGTGATGGTAAGGATGTCGGTAACAAGAAGGAAGTAAATCAGAAGCAGAAACGTAGCAAAGATAGGTACAGTAATAGAGGTCGCCGTAGAGGAGTGTCCCGAAACCCTACAACATACGATAATAGTGCTTCAGATAACTCTCCCATAGATACTTCTATTGCCATAGTATGTATAAGTCGACTTGCAAATGAATTAAATTCGGAAGAGAGCATTAAAGAAGCCTTTCACTTAGATGCACAGGGCCGTTTGCCGAGACAGGTTGTAACAAtcgatgacgatgatgatgacgTAATAGTGAAAGAAGAAAAACCTGTAAAAAAGTATGATGAGAAAGATTTAGACTACTTTTCTGTTATTCGAGTAAAACCTAACGATTTAACTAAAACCGaagaagaaatgtttgaaaagaaattacaagaaaatgaagcaaatcAAGGCTCGGATATGGACGCTGCGAACAACACAGGGACAAGTGGTTCGCGTGAAAAACGCTCTTTAAGTAGTGTCGTAGCAATGTTACGCGCTAGCCGTAAGCAGCCACAATTATTAGACTACAAACCAAATAGTGCAAAACATTCCACAGAACCTGTTAATGAAACCAGTAAACCTAACACAGATAATATCCTCATAGGGGACCAGGATTTCACGTCACTCCGAACCGATACACCCATTCGAATACCGGGTAAGGGTGATTTCCAGGTTGTCGAAAAAATTGTCAGCCAAGAAGGAGGCAAGAATAAAATAACACTTAAATTGGGTAAGCCAATCAGTAATGCTAATTCAAATCACGTGATAAATAATTCACCAGTAGGGAAATCACAAGATTCCAACACCCCAGCTGGAAATCTACCAAagacagatataaaaaatatgcaTGAATTAACAAATATGGCTCGATCACACAAAGGCCTTGACGAAATTCTCCGAAATCGCTGTGCAAAAGTTCGATCGTTTTGTCGAAATCTGCCAAAAAATCCTTTACTTTGGACGAAGAATCACGTGGCAACTTTCATTAAAACCGCAGACTGTGCGAAATACTCCAATCTATTTGTGAAACAGGAAATCGACGGCCATTCATTCTTACTGCTCACAGCACAGGAGCTTCATCACGTGCTTGGAATACATTTAGGTCCTGCCATGAAAATTCATGATTACATCTTCACTTTGCAGCAACTTGTGAACGAAGCGTACCAGAATAGTAAGGTAAATAATCGTTATGAAGAAAATGCAGAACAAGAACCTCCGTCTAACAAAAGCCATGTTGCGGCCGCGTTGCAGAAGGAAATTAAAGATGCTTTCGGTTCAGAGccacaagaaaaaatatcttgtgAACCAAAAATTGAGCAGACTTTGAGCAAACCAGATGTTGTGAGATGGGTAAGCAGTATTCCAGATAGTTCCTCGAAGCCTGTATATATATACCAAAGAAATTCTGCGGAACTCCACACGCGAGAAACTTTAAAAGACGTGGCAGAAAAGCCGCAAGTTATAAATGAACCTCAAGTGTTTACGAGAGGTGAATATAGCTACATACCAATAAATCCTGTGATAAATCCGACGGTAAATGCAAATCAAATAGCATATTATCCAGTTCCCATGTATCGATTTGGAAACAACTTGTTTCCGATTCCGGCAAATTATGATGCCAAGTCAGTTCCAAAGCAGTACATTCCCATTCGATTTATTGACCCCagacaaatacaaaaagaaactatTCCAAAGCTTCGAGAAATTGCTGAAAAGAAGGAATATACGATACAAGCTGACGAAGAGAAAATACTTAGTAATAACAATTCATCTTCATTAACAATACGAACGGTAGGAACATTGCCAAGTATAGGTCAAAAACGTaaacttgaaaataatgtttatttgGAAACTGAAATAAAGGAAACTGTTGCTGTACCTGAAAAACGGATTCCAATGCCGCCTTTCCCAGCAGCAATATACGATACATTTTTGCGAGACGTAGAAGTTACATTGAATGGAAGAGATCTCTGGGAGAAGTTCCATGCGCAGAATACAGAAATGGTTATCACCAGATCCGGAAGACGAATATTTCCTAGTCTCCAAGTGACTGTAAGTGGTATGAACCCTAACGCCAAGTATGTGGTCTTTATGGACCTAGTTTTGGTTAACGACCATCGCTATAAATTCGAATATGAAAGCTCTCAGTGGTTGGTTGCATGTGATGAGGTCACGAAGAAACCGGAACAACTATATATTCACCCGGAATCTCCAAACCTTGGAAATGTCTGGATGAAAGCCGTAGTCGATTTTACTAAATGtaaattaactaataatatatcaGATAGGAATGGCCATATGGTTGTACATTCCATGCATAAATACCAACCTCGGATTATCGTTAACGATTTCGACTACCCcacaatgaaaaaatttatctttccagAAACGCAATTCATTGCAGTCACTGCATACCAGAATACAGAGGCAAGATGCATTACAATTTTCCCAACTTTCTCCGGAATTACTTATTTAAGGACACTTGGACAGActctgaaacatttttgttgcctTAAGGTTTGCAAGTTTTAA

Transcript

ENSYDOT00000014132

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P59178	Lethal(3)malignant brain tumor-like protein 2 OS=Mus musculus OX=10090 GN=L3mbtl2 PE=1 SV=2
Q5R737	Lethal(3)malignant brain tumor-like protein 2 OS=Pongo abelii OX=9601 GN=L3MBTL2 PE=2 SV=1
Q3MIF2	Lethal(3)malignant brain tumor-like protein 2 OS=Rattus norvegicus OX=10116 GN=L3mbtl2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005176 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02820 all species →	MBT	mbt repeat	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00907 all species →	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004092 all species →	Repeat	Mbt repeat	Interproscan
IPR036960 all species →	Homologous_superfamily	T-box superfamily	Interproscan
IPR046360 all species →	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR050548 all species →	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR018186 all species →	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247 all species →	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSYDOP00000013719.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.