Gene detail

Detailed information of ENSYDOP00000019719.1 in Millepora dichotoma

Genomic Location: :...
NR annotation: CAH3110563.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSYDOT00000020346

TTAAGAGTAGGCAGTTTTGTAACGGATAATAGGCCAAAAATTTGTCttttagatataaaaatgttgatatacaAGTGTGGTTGGCCAGATTTTCGAAATGgtgtttatgataaagaatggcCATCAGTGATAGCTTGGTCCCGTGATAATCTTATAGTCTTTACACCTGGTTTCAGAAATAGCAATAATGACCTTCCAATTTCAAATGACACCATTTGTCTAATCCATCCGAATAAACCATGGGAAGTTCATAAAATGCAGACTGGTCAAGGAATTATTCGCATGATAAAGTGGAATCCAACCGGACAACAATTTTTAACGTGTGATAATAAGGGAGTATGTAAAATATGGCACCCAAATgaatattttattgatgattgGAAATGTTTAAATACACTCGATGTTGGTGAAGGAGATGCAGTAAttgatttattttggttttcagatGGTCATCATTTTATTGatgtagaaaaattatttacaagcacaaaagatttattaaagaaatttcctCTGATGAAAGCTAATCTTTTTCCTAATTCATTCAATGAAACGATAGAGGGTTTTATAGCTGTAACATCGTCAGGCTTACTCAAActagttttatttaataaagaagaaGAACCATCAATAAACACTTTTAAGCTTGGATCTACAAGTGTGAATGTCTTGGAAGCCTCCATTGGAATTAGTGGCTCAGGGAAGTTATTCATAGCTGTACAAACTGGAAGATCAATGGTTGAATTATTTACCGTTacattcaaagatttaaatagcCCAGTTAGTCTGACTATTGATGTTTGGCCCTGTATTATTCCCTATATGGAGAAATTGAATCCAGAATTTCAAAACCCTGAAATTAAGTTATTACGCACAGCGTTTACTGGTACAAATGACTTTATTATAACCATGTGCAGAGGTAGAAACGTTAGTTccgttaatatttttgaaatccgaAAACAATTAGTAACATTGCATCCGATATTTCCcacaaatcaacaaaattctcAGCAAAATATTGATACTCCATTATGTATAAAAAGTATAACATTTCAGAAAGACATAAAAGATATTATAGTcactaaaagcaaattttcaaattctgggaaaaataattttttatctcaaaaaatgattttattcgAAGCAAGTGGAATACTTCACATATATTCTCTAAATGATTGGTCTCACatagctatttcaaatttatgCGATACAATGGTGGGTTGCAAATCTATTTCCTTATCACCTTATGACCATGCTTTGTTTGCAGTAGACAAGTATAATGAAATGTTGCTATATAGTTTACCATTACTTTTGATAAATCAAGACCGATTTACTAATAATCAAGAGAAAGTAGcatttatttcaaatcttttacaaTTAGCAATAGTAGAGGAGAAGTTACCTTGGGACCTTGTGCTCGCTATGAGATCATTAGATGATGCTTCTATTGAAAATGTAATTCAGCTGTTCGCTCAAGATTTTCACGACCAAACCTTACATTTGCAAAATATGTCATAcagtattttcagtaaaattaaaagtcTGATTTACCAAATATTACGTAATGGTCATGGTATCATTGAAACCAATTACGCTGTAACTTTTCATGAACTTTATACGTTTATTTCAGTAAACTCGAGCGgggaaaaagatttgaatttccTTGAAGTTGTACAAAAATGTTGCACTTCCTTACGAAAAGAagctgatatttcaaaaattatccaaaaaattgatttaacagaattaaattttagtttttttaatgatacaacacaTAAATCGTTTATTCAGTGGGTCTTTGATTATACTATCCATGTTATCCGTATGCTACTATCATCCCATCATAACCAAAGCTGGAAAAACAAGTTACAGTTATATGATACCGTTATTTTTTCTCGTGTGCGtgaatttttattgatgttttatattttgtatcaaaagaaTATTGGTTTGGTACACCTGCATCCTATATTTCAATGTATGATATCATCAACTGACGTCACAGTTCAGCTTTTCAAGTTATATACAAAGCTTTACTTGATATCTTCAGGAGATAATAGCATTGAATTATCACTCCATGATTTACCTTTCAATAACCTACCATTAATGTATTTTCAACATCCAACCAATCCACGGCAAGAAAATGTATTAACACAATTGCATCagattaaaaatggtaaatttcaagATTTCGTTGTGCAACCAAAGCAGGATGATTGGAATTATATTCAGCAGACGTCTGTTCAAAATCCCATAGTCTGCGGAATTTCGACAGTAAATACATCATTTCGTCAAATTTATGATGGTATTAATTTGGTACCGACGTCTTTAATGAATGGAGAACTTGTCAAGAAATGTTGTGATTGTGGTTGCCTTTCTGTCTATTCTGCACATCCATCAAGAGTTTTCATAGCGTTatggaaagatttgtttcaaGAAACTTGTATATGTGGTGGATTTTGGAGAAAAGTAGAGTGGAAAGCAGATCAGTAG

Transcript

ENSYDOT00000020346

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20718	Med16_bridge	Mediator complex subunit 16, central helical bridge	Domain	Interproscan
PF20719	Med16_C	Mediator complex subunit 16, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR048338	Family	Mediator complex, subunit Med16	Interproscan
IPR048616	Domain	Mediator of RNA polymerase II transcription subunit 16 , central helical bridge	Interproscan
IPR048339	Domain	Mediator complex subunit 16, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13224	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15159	MED16; mediator of RNA polymerase II transcription subunit 16	-	Transcription machinery	ko03021	deepkoala