Gene detail

Detailed information of ENSYDOP00000045743.1 in Millepora dichotoma

Genomic Location: :...
NR annotation: MCP4800870.1, DDE-type integrase/transposase/recombinase [bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSYDOT00000047388

gaaaattATAGCATAGATCGATTCTTAAAACCAGCTGTATTTGACAAAGACCCAAACTCTCCAACTGCATCCAAAGAATGGACACATTGGTttagaactttttctaattttctcactGCAATTGAACACCATCATCCTGATAAACTGAATACACTAATAAATTATATTGATCACAATGTTTATGATTATATATCTGAATGTAATAATTATGACTCAGTTATAGAAATACTGAAGAACTTATATGTTAAACCTAAAAATCTAGTATTTGCAAGACATTTACTTGCTACACGTAAACAAAAATCAGGAGAAAATATAGATGAATATTTACAAGCCCTCAAAGAACtctcaaaagattttaattttacagcAGTAGATGCTGCAACATATCGTAATGAAGCAATTAGAGACTCATTTATTAATGGACTTTTATCAAATCACATACGTCAACGATTATTAGAAAATGCGACTTTAGATTTAGAATCTGCATTTACACAAGCTCGCTCCCTTGATTTAGCCCAAAAGAGTTCAGAATCTTATTCACAACAACAACATCCTATAAATGCTGCTGCTCAACCTGATGATCAGAATGAGGATTCTAGTCTAGCTGctaccaataataataaaaacaaatgttatttCTGTGGTAATAACCGCCATCCTCGTTGTAATTGCCCTGCTCGTAATGTTATTTGTCACAAAGGCTCAATAAAAGGACATTTTGCTAAAGTTTGTCGTCAAGATGATTCTCCTATTGATAGTAAATCTGCATCAGCTGCAATTTATCCTACTTTAGCTACATTATCAACAGTTTCCAAAAAGAATTTTCGAGTATGCACTAACATAACGATTAATGGACACTCAGTAAATGCTCTCTTAGACAGTGGAAGTACTGATAAgagttttattgataataatattgtgaaatcattaaaattaaaagtttatccTGAATCAGGTTCCATTGGATTAGCAACATCAGCAATGTCTTGTAAAATAATTGGCTTTTGTGTTGTttatatttctcttcaaaatagaaattatgaacAATTTAAACTCAGTATATTAGACAATCTCTGTGCAGACGTTATACTCGGAACAGATTTTCAATCTTTACACAAAAATATAGTTATAGAATATGGAGGAAAAGAACCCCCATTGACATTCTGTGCTCatctaaaatcaattaaaacagaGCCACCCactccattttcaaatttaactccAGATTGTAAACCTATTGCTATTAAGTCAAGAAAATATTCTCAAGAAGATCggatatttatagaaaaagaaactcaaaaactATTGAATGATGGTATAATTGAAATTAGTAGTTCTCCATGGAGACCTCAACCAATAGTCGTTATACAACCAAATGGTAAAAAGAGAATGGTGATTGATTATTCTCAAACTATTAATAGATATACATTATTGGACGCATATCCTTTGcccaaaattaatgaaatgattaataaaatgGCGCAATACAATTGTATGTATAGTTCAGTAGATCTCACGTCAGCTTATTATCAAATTCCCCTCAACCCAGAAGATCGCCCATACACTGCTTATGAAGCTGGAGGTAAATTATATCAGTTTACTCGATTACCTCAACGTATAACAAATGGTGTTTCCTCATTTCAACGCAAAATGGATGGATTTATAGATGATAATAATATCAAGAACACTTTTCCTTACTTAGATAATGTGCTTGTTTGCGGAAGAACATTAGAAGAACATAatgcaaatttagcaaaatttaaagctGTTGCGACAGAAAACAATCTcacaatcaatgaaaataaaagtatttatgGTGTAAGAGCTATTAATGTTATTGGTTATCATATCGAAAATGGAACAGTGAGTCCAGATCCGGATCGTTTACGCCCTTTGTTAGAGTTACCAATACCACATGATACAAAATCACTTCGTAGAGTTATAGGTATGTTTGCTTATTATTCGAAATGGATTAaacaattttctgataaaattcgACCTTTGAATAAAGCTGAGACTTTCCCTTTACTAGACAATGCTATTTCcgcttttaatgaattaaaacaagAACTTGCAAATGTTATACTCATGTCAATTGACGAAAATATTCCATTCGTTGTTGAGACTGATGCATCTGATTTTTCGATATCTGCGACTTTAAGTCAAGATGGTCGCCCTGTTGCTTTTCATTCTAGAACATTACAAAGTAGTGAACTTTCTCATTCGTCTATTGAAAAGGAAGCTCAAGCTATAGTTGGAGCCATTGAATATTGGAAACACTTTTTGCTTGGTCGATATTTTACTCTTATTACTGATCAGAAGTCTGTATCTTTTATGTTTGATATCAAGaatcatggaaaaattaaaaatgacaaaatattaagatggcgTTTAGCTTTATCATGTTACTCTTATAATACTGTTTATCGTCCAGGTAATGAGAACAATGCTGCTGATACTTTAAGTCGAACCCCGTGTCTTGCAATTAACCCCAATCATTTGAAAGATATTCATGATGCCTTGTGTCACCCAGGTATTACTCGCATGATTCATTTTGTACGTAgtaaaaatttgccatattctgTGGATGAGATCAAAAAGATTTGTCATGATTGTAATATTTGTGCTAAAATAAAACCTCAGTATTATAAACCAACTGAAGCATCATTAATTAAAGCTACACAGCCTTTTGAAAGACTGAATATAGATTACAAAGGACCTTTACCAAGTAATAGtaagaacaaatatattttgactaTTATAGATGAGTATAGTCGATTCCCATTCGCTTATCCGTGTCGTGATATGACAACAGAAACAGTTATTCAATGTTTGACacaattattttctatttttggtatGCCATCTTATTGTCACAGTGATCGAGGACCATCATTCATGTCACAAGAATTACGACAGTTTTTATTTAATCATGGAATAGCAACCAGTAGGATAACTGCATACAATCCTACTGGAAACGGTCAAGTGGAGAGGTATAATGGTATTATTTGGAACACTATTTTATTAGCTCTGAAAACGAAAAATCTACCAACACAAGAATGGGAAGTTGTACTCTCTGACCCTCTCCATTCTATTCGTTCATTATTATGGACATCCACTAATGCAACAACTCATGAAAAATTCTTCTCGCTCCCTAGGAAATCATCAAATGGAAAAACTATTCCAGAGTGGTTAGTTAATCCTGGAACAGTTCTTTTAAAACGAAACGTTAAAGGAAGTAAATATGAATCTCGTGTAGATGAAGTGGAACTACTTGAAGCTAATCCACAATATGCATATATTCGTTATCCTGATGGTAGAGAAACAACagtatcaataaaacaaattgctCCTCCAGGTGATATTGGTAATGGACATTATAGCACCCCAGAAATTATTGATCATGCCATACCGCTTAATACATCTTCAGAGAAAAATATCTCAGCAGAAAATATTACTACTGAAGCGACACCTGAACCACCCAAAATTGTATCATAA

Transcript

ENSYDOT00000047388

Protein

Uniprot

Uniprot term	Description
P03555	Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) OX=10644 GN=ORF V PE=3 SV=1
Q02964	Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) OX=31556 GN=ORF V PE=3 SV=1
P03554	Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) OX=10648 GN=ORF V PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF13650	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan