Gene detail

Detailed information of EVM0001129.1 in Myxobolus honghuensis

Genomic Location: Contig00498:395241...404270
NR annotation: RNA14796.1, AP-1 complex subunit mu-1 [Brachionus plicatilis]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0001129.1

ATGTCCCTTTCGTCAATCTTCATTCTAGACGACAAAGGAACCCGGTTGGTCTACCGGGATTTCCGGGGGAATATCGACCTAAATTGCATCGAAGTTTTCGCCAAAATGATAACGGACCCCGATCACGAGGTCTCGTTGAAACCCGTCTTCAAAAACGTCGTGGCGGTCACTTGCTGCAACGTGAATGCCATGACCATCTTAAATTTCCTAAAAAGTTTCGTTAAAATTTTAACCGAATGTTTGGGGACATTAGAGTATAAAAACATCACAAATAATAGTGTTTTTATTATCGAACTCCTGGATGAGGCGATGGATTATGGATTCCCTCAATTCACCGAACCTAAACTCGTTAAATCATGCGTTTCCTATTCGATTTTCGATAAACCCCAAAATATTACTGCTCCTGCGATAACTAGGAACGTTTCTTGGCGAGCTGATAATCTTAAATACCGGAAAAACGAGATTTTCCTAGATGTCGTGGAAAAAGTTAATTTATTAGCGAACTCTAAAGGAAAAGTGATTACAAATGACATCTACGGAGTTTTTTTGATAAAATCGTGTCTTTCCGGGATGCCCGATATCAAATTAGGGTTTAACGATCAGGTTCTATTGAAAAATAACGATTCTAATTCGTCTCAATCGGCGAGATCTGCGAATAGAAGACGTTATGTAGATTTACACGATATCAAATTTCATCAGTGTGTAAGATTGGATGCTTTCGAGAAAGATCGATTAATCTCGTTTATCCCACCAGATGGAGATTTTGAACTTCTTTCTTATAGAGTAGATCTCCAAACGCGCCCGCCTTTTTGGGTGGATGCGCAGGTCACTTTAAATTCTGGAGATTGCGTGGATTATAATATTTATGTTAAAAGTTGTTTTGGGCGGGAACATTGTGCGAATTATGTAGAAATACGCGTTAATGTGCCGAAAGATAGTTTTTCTGCCGCTTTTAAGACTTCTAATGGCGTTTTTGAGTATCGACCAGAAGAAGATAGTTTGGTGTGGAATTTAAATCAGAAAAAGAAAGTGATCATCGATACAGACGCTGCTCTCGACGATGCTCAAGCCATAAATTATTTATTAGCTTGCGATGACGTGACAGTTTTGGCTGTAACTCTAGTTGCTGGAAATGCCAGTATGGATATAATCACTCCAAACGCCCTTAAAACTTTAAGCTACCTCAACCATGATATTCCAGTATACACTTCTGGCTCTTACAATCTTTCTGGCGATTTTATAAAATGTAACGGATTTTATGGAGAATTAGGTTTTGCGGACATCGAACTCCCGCCTTCGAAGTTTTCCGCCAAAACTGACATGAATTCCGCCCAGGCTTTGATATATTACGCTAAAAAGTATCCAGGAGAAATCAATTTTCTATTTATTGGTCCGTTGACGAATTTAGCGATTGCAGTTATCCAGGAAAATAATCTTCCTGCTTTAATGAAGACAGTTAACGTAATGGGGTCAGATCGATCCGCAAAAACTGTAATTCAGCCCACGAAATACGCTGAATTCAATACATTCCGTGATCCTATCGCCTATTATATCATAGGAAAATGTTTTAAAAATATTCCAAAACCAATTCAGATTCTGGATTGGACAACATGCGTGGAGTATTTAATTCCCGCTAAAACTGTCAAAGAAATTCGAGCTTTTTCGAAATCCCACCAAAATACTAATCCTTATCACGAACTTTTTTGTCTTTTCACAGATAGAAGTAACCCTTTGATAGAAAAATATTTCTTAAATTCCGAGTATCTTTCTTGTGATCTTTTGGCAGCAGTTAGTCTTAAACACCCAGAAATTTTTATTGAGAAAAAAAGAGTACGGTTGAAACATGTGGATATTTTTGGTCCGAAATATGGGCATACTGAATATGAAAACGATGATCATGGAAATATCGAGCTTGCTATTAAGGTTGATATAGAATTGTTCAGATGGATTCTAACTTTATGGATATCTTATAAATGTAATGGAAGCCTCATCAAAAACTGCAGAATTACATTTTTTAAAACTAAATAA

Transcript

EVM0001129.1

Protein

Uniprot

Uniprot term	Description
P35602	AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans OX=6239 GN=unc-101 PE=1 SV=2
Q3SYW1	AP-1 complex subunit mu-2 OS=Bos taurus OX=9913 GN=AP1M2 PE=1 SV=3
Q9Y6Q5	AP-1 complex subunit mu-2 OS=Homo sapiens OX=9606 GN=AP1M2 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan
PF01156	IU_nuc_hydro	Inosine-uridine preferring nucleoside hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036168	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR028565	Domain	Mu homology domain	Interproscan
IPR036452	Homologous_superfamily	Ribonucleoside hydrolase-like	Interproscan
IPR050431	Family	Adaptor complexes medium subunit	Interproscan
IPR001392	Family	Clathrin adaptor, mu subunit	Interproscan
IPR011012	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR018240	Conserved_site	Clathrin adaptor, mu subunit, conserved site	Interproscan
IPR001910	Domain	Inosine/uridine-preferring nucleoside hydrolase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10529	AP COMPLEX SUBUNIT MU	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016799	Molecular Function	hydrolase activity, hydrolyzing N-glycosyl compounds	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0030131	Cellular Component	clathrin adaptor complex	Interproscan