Gene detail

Detailed information of EVM0003752.1 in Myxobolus honghuensis

Genomic Location: Contig00110:376665...388040
NR annotation: KII66346.1, Transducin beta-like protein 3 [Thelohanellus kitauei]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0003752.1

ATGAATGATAAAAATTTAATAAGTTATTCAAAAACGTTCTGCAATCGTCCTCTTGTTTCAGATGGCTATATAGAAGTTTTGGATCCAGATTTGATATTTGTTGCGCAAGGAAATAAAATCAACATTGTTGAAATCCATAGTCTTGAGGCTAAGACTTCTATCGAAGGGGATGAGCATAAAATAACTGCTTGGAGTATGGAAGACCAGTTTCTCTTGACTGCTTCTGAGAATCAAATGGCAAGAATTTGGGAATGGAAAACAAAAACATTAAAACATATTTTCAAATGCGGTCATAAAAAACCAATAACTCATATTTGTTTCCAACAAAAGCAACAAAATATTATTACAGCCTCCAGCGACGTCATCAAAGTGTATAATCTTGTCAAAAAATACAATATTTTTGACCTGAAAGGATTTATGGGTCCACTTCATTTTCTTTCCACCATAAAAAATATTCCAAATCTTATAATAACTGGATGCCAAGATAATAATATAAGAATATGGGATACTATAAGTGGCAGATTAAAATTTACTCTCACGGACCATTCTTCCCAAGTCATATCTGTTGATCAATTTGAAAATTCTATTTTCACTCTTGGACGTGATAAAACTATAAATATATATCGAATCTCAGATTTTAAAAAATACGCATCCATTCTACTTTTTGAAGATGTTGAATGTATGCGCGTTATTCCAGGAAATCTTATAAATATCAAAACAGATTTCTCACATCTTATTTGTACTATTGGTTCATCGGGGATTCTTAAATTCTGGAAACATTCTCCTTCTAAATGTTTATTTCAAACCACTATAAGCCAGCTTTCGAATACTGGAAGTAAACTTCTACAAAGATGTCTTACCCGATCTATTTCTCTTTTTTCCAATGAAAAAATGGCGGTTATTTCAACTCATTTGGCGGATTTAGTTTTTTTCAGTTTAGACGATCTTACAATTGTCAAACATTCAAGTTTGAATCTTAACCAAATTTTCTGTCTTGGTTTTTTCGAAAATAATATTATCGTGTCTTTTGATTCTCCCAGTATCAGGATTTTAGAATCTCATTCGAATAATTGTTTGCAAGTTTTGGAAGGCCATGATGATACAGTTCTTTGTTTTGATTACTACGATGGGTGTTTAATTACTGGCGGGAAAGATGAAAAAATACTATACTGGGAATTAGATGAAAATTCTAAATTCGTCAAAATCGGGCAAGGATTAGGACACGATGGCGCAATTACCGCAATTTCTTTATCAAAAAATGATGATAATACACTTAAATTATGGAAATTAGATTCTAAAAAATCAGAATTTTCGAATTTAATACTCGAATGGTCAGAAATTGCGCATAAAAATACAATAAGTTGTGTAAAAGTTTCGCTGAAAGATAAATTTATCGCTACAGGTTCTTACGACAAAACTATAAAAATCTGGTCAAAAAATAAAGAATTGATTTCTCAATTAACGGGCCATAAAAGACAAATTACATCTTGTGATTTCAGCAAAACTGATAATATATTAGTTTCTGAAGGTTCCGAATCTTCTGTATGTTCTGTGGCTTTTTTAAATAATGGCATACATCTAATTGGCGGTCGTTATTCTTCGGGATTGATCAAAATCTGGTCAATTTCAGAAGGAAATGAGATTCAATCTCTTGAAGGGCATGCTGAAAAAGTCTGGACATTATCAATAAATGAAAATGACGATATTCTTTCTGGAGATTCTGAAGGGTGTATTACCGTTTGGACAAATACAACTGAAATAACCAAAACTGAGAAACAAGCTGAATTCTTAGAACTGAAAGAAAAGGAACAAGAATTATCGAATCTTTTAAAAAATAAAGAATATGAGAAATCTTTAAGACTTGCCATTGAAATTAAACACTCCAAAACACTTTATGAACTACTAGAAAGAAATATCAGCACTCAAAATGGATTAAAAGTTATTAAAGAAGTTGTTACTAATCTTAAATCTGAAGATTTAGGCATTAAATTTGTTTTTATAGATAATCTTTTGGGGTATATTGAAACGTGGAATAAAAATACAAGATATTTTTCAGTTGCGCAGATTGTTCTCAATATAAATGAGGATTACAAATCGAAATTCCAGAAAATTCAACTTAAACCTCTTCGGGAAATAAATTTTTATCATATTAATTTTTTACGTTTTAATGCTTTGGATAAAAAATTAATGTCAAAAATGCAATCTTATTTCATCTTTAAATAA

Transcript

EVM0003752.1

Protein

Uniprot

Gene family

Uniprot term	Description
Q5U2W5	Transducin beta-like protein 3 OS=Rattus norvegicus OX=10116 GN=Tbl3 PE=2 SV=1
Q8C4J7	Transducin beta-like protein 3 OS=Mus musculus OX=10090 GN=Tbl3 PE=2 SV=1
Q2KJJ5	Transducin beta-like protein 3 OS=Bos taurus OX=9913 GN=TBL3 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF08625	Utp13	Utp13 specific WD40 associated domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR013934	Domain	U3 small nucleolar RNA-associated protein 13, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19854	TRANSDUCIN BETA-LIKE 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000472	Biological Process	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000480	Biological Process	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0030686	Cellular Component	90S preribosome	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14555	UTP13, TBL3; U3 small nucleolar RNA-associated protein 13	-	Ribosome biogenesis	ko03009	deepkoala