Gene detail

Detailed information of EVM0004053.1 in Myxobolus honghuensis

Genomic Location: Contig00221:1744875...1758009
NR annotation: KAF0990875.1, hypothetical protein HZS_1488, partial [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0004053.1

ATGGATAATCGGGGTATTGTAGTGGACTACCACCAGGAGATTATCCATGCGCCTGCAGGTCCCTACAAGGATTACCGTTTAAGATTGATGTATTCCCTATATCGGTACGAATCCGGCCTGGAAAATACACCAGTGCGCATGATGCTGGAGTACGCGGGGATTTCCTACGAAGATAACGTAATAAAATGCCCATGTTTACGGCTCCCCGATGGGAATTACATTTTTGAAAGCAATAAAATTTGTCAATATTTGGCCTCTATTCACGGTTACATTTGTACCACCGATAAGCAAAAAACCGAGTGTGATCAGCTGGTTTCGGAAACTCTCGCCCTCCTTTCGCTCTTCGAGACTACGAAGATGGACGAGAACCTCGAAAAGCAGCTAATGGATGTTTTTACGAAAATTGCCGACTACCTTTCGGTGTCCCAGAACGATTTTATTTTCGGCGATAAAATTACTTATGCGGACGTTTTTGCATATTGCTTGGTCGACGCGGTTCCCGATCCCATGAAGGAGAAATTCCCAAAAAATAATATTATAAAAAGGTTCCACAAAAATTTCAAATCGAAAATAGTGGGGAAAATTGGAGTCACGCTGAACTACACTACATCTTGCTTCGAACGTTTAAAAAATGGGAAAATGAATCACTTAGGACTATGGCTTGAATCCCGCCCGATCCAAACTCTAATCGCAGCCTATGGATCTCGTGAAATTCGAGAAATTTTGTATTTTTCAAATTATATTGACGACTGCCTAGCCGATATGAATTGTATTTCATTCTGCACCAAGTCGCCAAATTACATAGCATATTCTAACAGAAAATCAGAATTTCATTTTTTAAATCTAAAATCGAATCCACCTTTAAAATTTGTCCGAGGTCTGGAAACAATTGCCACGTGCTTGTGTCTAACAGATCCAACCGTCTCGGCTATAGGGTTAAACAATGGGTCCGCCGAGATAATAGATCTCGAGGCAAATAAAACATATTCCTCATTTAAAGGACATACCGAAAAAATTTTATCTATAAATTTCGCGCTATTTTCCAGGTTAATTGTAACATCTTCAAAAGATTCGACTGTTAAGATATGGGATACCAGACAAAAGGTTCCGATTAGACAGTTGAGATTTGATGATTCTATTGTCTCGAATTCTGTGTATTTAAGCCCGGATAACGCATGGGTTGTTGCATCAGTTACGGATGGCACTGTATCGATTTATGATATTAAAAATGGAAAAGTTTTAGAAACTCTTCCGAATACTGGAATTTCAAATTCTGATTATACATCATTAATTGAGTTTCATCCTAACGATAAATCAATTTCTACATGCTCTCAAGAGGGTCTTATAACATTTTGGGATCTTGATACGTTTACTCCAACCTTTTCCCAAAATATTAATGACCAACCAATATGTTCATGGTTTCATGAAAATTCTCTATCATTATATATTGGATCAAAATCTGGGAAAATATTTAATGTCGAGTGGGAAGGAAACGATTTTACAGAATGTATGTCGTTGGAATCTTCAACAATTTATGGTATAAGTCAGAGTATTGATAAATTTTATTTTATTGCACCGATTAACGATCATCTTTCAGTTATTGAAACGCCATTTGATATGTTTTTAAGACCGACTGGTTCTTTCATATCATCTGGAATTCCTACATCGAATCAAACATTTGATCGATCACCTAACAGGTCTCAAAATCGATCTCCGAATCGTTCTCCTAGTAAATCTCCTAATTCAAAATTCTTCTCGTTTGCTCATAAAATTCTATCAGAAAAGATCACTCGGAGAATGAAAATACATGAAACTATTTCCCGTATGTTAAGAATAAGAAATTATCAAGGTGCGATAAAGGTGGCGGAAGATAGTTCAGACAATGTAATCATCTCAACACTCGTGAGAATTTTGGTTAAAAATGTGAATGATATTCGTGATTTGGCACCTCGATCTATTTTGAAATTAGTGAAAATTTTATTGAATGACCCTAATTATTATGGAATAGCATGCGAACAAGCCTGTTTACTTTTAAAAACCGTGAAAGTTGATTTGAGTGTTAAGAATGAATTATTTGAAATTTCTAAATCACTTGATAAAATAAAGGATATTGATAACAATATTCAATTATTTAGATTATTAGTTAACAAGCACAAAAATTAG

Transcript

EVM0004053.1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF14497	GST_C_3	Glutathione S-transferase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036282	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR004046	Domain	Glutathione S-transferase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19845	KATANIN P80 SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007019	Biological Process	microtubule depolymerization	Interproscan
GO:0008352	Cellular Component	katanin complex	Interproscan