Gene detail

Detailed information of EVM0004882.1 in Myxobolus honghuensis

Genomic Location: Contig00107:23649...29721
NR annotation: KAF0988650.1, hypothetical protein HZS_2842, partial [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0004882.1

ATGGGTGAACAAAATATTATGATGGTTCATTGCTTAAACGCCATATTTATCAAAGATATTATATTTTGTGTCGTTTTCACTACATTTTTTACCACTAATAGGGTGATCGCAGGATTTTTTTCAATATATGGATCGCATCTCATTTCATCCCACCTCACTTCTACACTGACGGAAGAAAATCGAGATAGAAATGAAAATAATCGAAATAAATTCGAAGTTAAATCTATTCCTGAATGGGATAAAAGTTATAGGCTAAAAAGACACTGGATGAGTAAAAATATATACAGGATTGAAAAAGTTGAATTGGAAGAGGCCGTAAAAGATTTCTACATCGATCCTGAAGATCCTAATAACTTAGCGTATCATTCAGTTACAAATAAAATTTATATTTGGAGACAGAAATCAGGGAAATTCGTGCAAGTGGGATTATCTGAAGAACCGCCAAAATGGTATTGTCAATTTTTTATAGGCACTCCTCAAAAAATCGGAAAAGTGAAGAACTTAAAATACTGCACAATCAAAATAGAAAAGGCGGAAAGTTTATCTAATAAATTGGCGGGTTTGGATTTTTTGAAGATTACATTTGGTACCAAGAATATAAAAGAAGAGAAAATTTCAGAGGCGAAATTTTTTGCGCCAGAAACTATTGTGAAAATAATTGACGTTTATTATAAGAATAAAGAAGTTTTTGTCATTGCAAGAGAAATTAAAAATTTACCAAATTTGTTTTGGAGTAAAATTGATGATTTTGAGTTTTCAAAAATCGAAATAGATTTAAATTTAGAAGACTGGTATAATTTTTATTTAAGTAGGAATCGGATGGATTATTTTATAAAACCAATTCTGATTCCAGAATTAAATAATATCGCATTTTTGAATATTAATTATAAAACTATTTCACGAAAATGGGTTAACACCACTTTTATATCTTTTACTGGCGCCACAACCTGGATTCCTATAAAAATAAATAAAATAGAGCAAAAGAAATTTTGTGTTTGGCCGACTTGTAAGGTTTATTTTGAAAATATTAAAAATGTTTATAATTTTGGCGGGAATTATGAAAGTTGGAAATATTCATCTCTTCTACAAGCTAAGGGCATTTTATATGAAAATGAAAAGGTTTTTGAGAATTTAAATTTTATTTCAACCGATTTTGGGTATGAGTGGAAAATGGTAATTGACCAAAAAATCGAAAGTGTGGAATTTTTATTGTCCGGTGAAATAATAATTGGAATCACAAAATCTAAACGCCATTTAGTAATGAGTTTGGATTTTGGTAATTCCTGGATTGAAATTCCACTAAAAGATGAAATTAAAGAAATCGGACGACTTTTTTACTGTGAAAATGAATGTCAAACTTCGGATTATGAAGTATTTTCTCCTGGAATTTACCACAGCCAAAAATGTTTTCAAGGAGAAATAAAACATTTTTATCGCAAAAAATCTGAAAAAATTTGCGAAATAAATTGGAAAATTTTGACACCAGGCAAAAAAACATCATGCGAATGTAAATTCGAAGATTTTAAATGCACATTTGGAAACTTGTTTAAAAACGGTATTTGTCTTAAAGATGAATTTTACCGCCAAGAATACAATAAAAAATCGTGCCAAATCGGCACATATATCGACTCTGAATTTCCACATTTCCAAAAAGGTCATATAAATTTTGGTTCTGATGAAAAAAATTCTGTTGGGTGTAGATTCTCAAACTGCGCATATTTCTGCTTTTCCGGCGGTCCGGATACCTTTGTCTGTACATGCCCAGATGGAATGTCTCCTAAGGGATCAAATAAGTGCGCATGTGAGGATTTAAAGCGCGGTTGTGGAAGGGTTAAAAAATGTTCAAACTCAGAATTTGAATGTCTTAACCAAAATTGCATAAAATCTGAACTAAGATGCGATGGTAAAGATGATTGTGGCGATTCTAGTGATGAAGTAGATTGCAAATTATTTAAATGTCGAAATTTTGGCGCCTTTTGCGACGACGGACAATGTATAAAACCGAATCAAATTTGTGATGGAGTTTTTAACTGTAAAGATTTTAGCGATGAACATGGGTGCACTGTAACTTCCTTATACGATTTTGATTATGATTGTCTTCTTAAATGTAGAAATATATGTATTGAACCTTCAAAAATTTGCAATCACATAATAGATTGTCGGTCTGGAACAGATGAAATCGATTGTGATTATAAAATAATCTGTGGGGGAAAAAATAATTTCCGGTGCGAAAATGAGAATATATGTTACTCTTTAGCTCAAAAATGCGACGGAATTTCAGATTGTTCAGATGGAAGTGATGAGAAAGAATGTAAAGGTTTATTTTCTAAAAATACAGGACCAAAAAAATGCGCAAAATCTTTAAAATTTTTTTGCGCGGACAAAATTAAATACATTTGTTGGAATCAAGTTTGCGATGGCATCCGAAACTGCCCCGACGGTCTTGATGAAAAAAATTGTGATCATGATGCTCAAAATTCTGGACTTTTAATTGGCGGGATTATTTCTGGATCATGTGTAATGAAGAAGTCAATATTATCACCTGATACTTAA

Transcript

EVM0004882.1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15902	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR031778	Domain	Sortilin, N-terminal	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR050685	Family	Low-density lipoprotein receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08609	ADAM20; disintegrin and metalloproteinase domain-containing protein 20	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala