Gene detail

Detailed information of EVM0008181.1 in Myxobolus honghuensis

Genomic Location: Contig01072:852422...875054
NR annotation: KII68704.1, Vacuolar protein sorting-associated protein 11 [Thelohanellus kitauei]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0008181.1

ATGGCTAGCGAAATATTCGATTCTAATGAACGCGAGCTCAAAACGCTGATCGATAGGGTAAAAAGCCATCTGGATCAGAATATTCGCGAATTGGTGGGAGAACAACGTAGAGACAAAGTTAAACAGGTCCAGAATTTGATAGATAACGCGTTTGGGAAGGTTGGGAGAATGCAGGACGAGGTTCTGGTCGCCCCGGGCCATTTAAAAGCCAAAATGAGCAACAAGGTGGCCAATTACAATAGTATTCTTTACGGCTTGCAAAATTCTCTGACGGATCAGAAACCTGTGGATTCTAGATCGAAATTACTGCCTTATACTCTGAATGAGACTAATTATAGCACCGGTTTGAAGGGTTTGGAATTGCTCAATAATGCTAGTCAGTCTATTGATCGATCTTTGGATATATCCACACAAACCGAAAAAATGGGATCTGAAGTTCTTCTTAACCTAGACTCCCAAAGACAAACTCTGGAAAGAGCTCATGGTCAGCTTCAAAAAAACGATCGAGAACTTTCGAAATCTCGATGGCTAGTTCATAGCATCAGAACAGGTATATACAAAGGGGTTATTTTATTCTCAAAGAATATCACCGGAGTAGAACCATACCCTAAGTTAGAGGCCTTAGGTAATTTTAACAACCGCTTTAGAGATGTTGTTTTTCCAGCTGATAAAACTTCGAATATAAGATATGTTGAATACTATATCCCCAAAAACGAGACAAAAATGGAAAAGCGACTGCGTGAAGAAAGACATGCACTATACGAGTTTAACAATCAATTTTGGCTTTTAAACAACCAGCATTACGAATTGTTACGCCAATTCGAGTTCTACAACTACAACGAAGTTCTGGACAGAAGTACGAAGAATTCATTCTCCTTGTTAAAAGATCTGAAAATTTCATTCATTACAAGTGGCAAGGAGAATATCATTATTGGAGATTCTGTGGGCTCAATTTACATTCTTAACAAACTGCTTTCATCTTTCTCTCTGAAATTCGGGGCTTTCAGTTCTTGCATCATTTTCATCTATATGAGTGATAAGCTTCCGTTTCTGTTTTGCGTGGGAAACGACGTAGGAGAAATGGCGCCAATTTTGAAAATCTTCGACCTGAAGACAGTCGGAATAAGGGGAATTCCTTTCTGTTGTAAACTCCTTAAACTTCCTATTCCTGATGAGAATTCTACTCTTAGTGCTGTGGCGATTCATGAAAGATTGACCCTCATGGCTCTAGGGTTCACTTCAGGGACGATTTTGATACTTAAGGGAGATATTTCTGGGAAGAAATATGCCGATGAAACTTTAATTAAAAAAGTTATTTGTAAATATGCTGATTTTCTTTACGATAAAGGGGATATAGAGCAATCTATGACCCAATATATACAGACTATCGGGATCATAGAACCTTCATATATAATAAGAAAATTTTTAGAAGCTCAAAGCATTAACCATTTAACTGCATATTTAGAAAATCTTCATAGAACGCCATTTGCCAATTCTGATCACACTACCTTGCTTTTAAATTGTTATATTCGATTGAAAGATATGCAGAAACTGGATATCTTTCTTAAGGGCGATAAAGAATGGCATTTCGATATTGAGACTGCGCTGAGAGTATGTCACCAGGCAGGATTTATGGATCAGGCTTTATGGTTGGCTGAAAAAAGTAACCATCATTCCTGGTATTTAAAAATAAAATTGGAAGATGTTAAAGATTATAAGTCTGCTATCGACTATCTTAAAAATCTTCCTGTCGTTGAAGCTGAAAATGTATTGAAAAATTATGGTCGTCGATTGTTGAAAGATACTCCAAAAGAGTTAGTCGAACTTTTAAAAAACATGTGTACACCTTCTGATTCTAATACAAACCCATCTTCTCCCGAGGATTTTATTCATATTTTCGTTCAACAAAGAGGCTATCTCCAAACATTTTTAGAATATATAGTAAAAATCGATCCAAATTGTTCCAATAAAATATACAACACTCTTATTGAATTATATATTTATGAAATTGCGCGGGAAGACGTGCAAAATAAAGCTGAATTCGAGACCAAATGTCTGAATATTATTAATTTCAAAGAAGGCAAATACGATATAGATCATGCGCTGATGTTATGCCAGTTAAATAACTTTATGGCGGGCTTGGTTGCTCTGTATGAAAAAATGCAATTATATTCACTAATTCTTCAATACCATATAGACGTTCGAGATTACGACGAAATTATCAACGATTGCGTTAAATATGGTGATTTGGAACCTCAATTATGGCGTAAAGCCTTAGATTTTTTCACTAAAAACTACGAAGAATATTTAAATATAAATAAGCTTATAACTCCTGTAGATCTGATTAAAACTTTAGCCAAATCTGACAAAACTCAAGTTAAATTAATCAAAGAATATATTAGCGAACATTTTAACGAATCTAATATTAAAATCAGAAAGAATAATGAAGATATAGATAAAAAGAAAGAAGAGATAGAAAAACTTAAAAATGAAATAGATTCAATTGAAACTAGAACTAAAGTTTTTCAAAATTCTAAATGTTCGATTTGTGAAAACAATTTAGAACTTCCCGTGATCCATTATTTATGTGGCCATTCTTTTCATCAATTTTGCGCTGAAACACAAACTAATGACAATATATGTCATATATGTTTTGAAGAAATGGAAAAAATAAAATCAGGATTGCAATCAGAATTCGATGGGGATGAAATAAAAAGGAATTTCGAAAAAGAGTTCAGATCCATTAGAAACGGCCCTCAAATTTCTAAAACTTGA

Transcript

EVM0008181.1

Protein

Uniprot

Uniprot term	Description
Q91W86	Vacuolar protein sorting-associated protein 11 homolog OS=Mus musculus OX=10090 GN=Vps11 PE=1 SV=3
Q9H270	Vacuolar protein sorting-associated protein 11 homolog OS=Homo sapiens OX=9606 GN=VPS11 PE=1 SV=1
Q54YP4	Vacuolar protein sorting-associated protein 11 homolog OS=Dictyostelium discoideum OX=44689 GN=vps11 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00637	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan
PF12352	V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	Domain	Interproscan
PF10231	COA8	Cytochrome c oxidase assembly factor 8	Family	Interproscan
PF05008	V-SNARE	Vesicle transport v-SNARE protein N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000547	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR010989	Homologous_superfamily	SNARE	Interproscan
IPR038407	Homologous_superfamily	Vesicle transport v-SNARE, N-terminal domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR018796	Family	Cytochrome c oxidase assembly factor 8	Interproscan
IPR007705	Domain	Vesicle transport v-SNARE, N-terminal	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23323	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0097193	Biological Process	intrinsic apoptotic signaling pathway	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0006904	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007032	Biological Process	endosome organization	Interproscan
GO:0007033	Biological Process	vacuole organization	Interproscan
GO:0030674	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0030897	Cellular Component	HOPS complex	Interproscan
GO:0048284	Biological Process	organelle fusion	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20179	VPS11, PEP5; vacuolar protein sorting-associated protein 11	-	Membrane trafficking	ko04131	deepkoala