Genomic Location: Contig01003:1490634...1496547
NR annotation: KAF0991605.1, hypothetical protein HZS_3723 [Henneguya salminicola]
| CDS | ||||
| EVM0008496.1 | ||||
| Transcript |
| EVM0008496.1 |
| Protein |
| EVM0008496.1 |
| Uniprot term | Description |
|---|---|
| A2AT37 | Regulator of nonsense transcripts 2 OS=Mus musculus OX=10090 GN=Upf2 PE=1 SV=1 |
| Q9HAU5 | Regulator of nonsense transcripts 2 OS=Homo sapiens OX=9606 GN=UPF2 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02854 | MIF4G | MIF4G domain | Repeat | Interproscan |
| PF04050 | Upf2 | Up-frameshift suppressor 2 | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039762 | Family | Nonsense-mediated mRNA decay protein Nmd2/UPF2 | Interproscan |
| IPR003890 | Domain | MIF4G-like, type 3 | Interproscan |
| IPR016024 | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR007193 | Domain | Up-frameshift suppressor 2, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12839 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000184 | Biological Process | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0005844 | Cellular Component | obsolete polysome | Interproscan |
| GO:0035145 | Cellular Component | exon-exon junction complex | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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