Gene detail

Detailed information of EVM0009788.1 in Myxobolus honghuensis

Genomic Location: Contig00115:642810...654015
NR annotation: KII66467.1, U5 small nuclear ribonucleoprotein 40 kDa protein [Thelohanellus kitauei]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0009788.1

ATGTCATTCCAGAACTATGTCGTGCCTGTGAGGAACCCAGAAGGTCCACAAATAAATGCAGAACGACAAATGGAGATTTCTATCGATAGCCAGGGCAAGAAGAAGTTTTCAGAAATGATGGAACGCACTTCATCACTAGCCTCACCCGTTATGCTGCTTACAGGACACACTGGTGAATTGTACAGTCTACGTTTCCATCCTGGGGGCGCTCTATTAGTTTCTGCTGGTCATGACCGCAATATTCATTTTGACGTCGTTATTCTATTTCATCTAGAAGTGTCAGATTTTCTAGCCTCCTATAAACCCGACAATATACGAAGGCTTTTAATTTTATACACTGGAGAAGCCCCATTTATTATGAACCACAATTCTAAAATAAGCAGATTACATGAACTGTTTTATGTCTGGACTTCATCTTATCATCATCATAGTTTTATATATACTCCTTTCTATAAATTCGAGAAATATACAAGAAAAGAAAAAAAGATTCCTTCTAAAATTCGGTTTAATGGTAGGAAAAAGTCAGCAATCGCTTTAGTATCAAAGTGTGACAAATTTAATTACGATCGTATCAAGTATATTGAAGACTTGTCTAAATATTTCCCAGTTGAGATGTACGGAAATTGTTTTGGCAAAAGAATTTCGAGGGAAGAGCAAATAATTCTATACAGAACACGCATGTTTTCTTTATCCTTCGAAAATAGTGTATGCTACGATTATTCGACAGAAAAATATTCAAATCCTATATTATATAGATCTATTCCCGTGGTTATTAATCCAGATTGGAATAGACATTTACTCATTCCAGGCTCATTTATAAACGCGGTAGATTTTAAATCTCCTAAAGAACTCGGCGAATATTTACATTTTGTATCGGAAAACTATTTCGAGTATGCTAAATATCTCGACTGGAATAATCATTATAAAATGACCCAATCTCGAATTATGTGGGATGTGTGCCACATTCAAAAATCGATACTCGATTCGAAATCAAATGGATTACTCAATGATCCGACATACTTTAACTTACTTGTTTTAAGCATGTGTAGTTCTTTTAATAAAACGCAAATTATTTGGAATGCTCATGGCGATTGTGAAAATATTGCCGCTCTTAAAGGACATCGAGGCGCTATTACTGAAACTGCCTTCTCATCTGATGGAGAACATCTTCTAACCGCTTCTGTAGATAAAACAGTTGGACTGTGGGATTTTGATAGTGGAACCAAACTACGAACCTTCCGAGGACATTCGAACTACGTCAATGCTTGTGCATATTCCCGCCACTCGGCTCAACTCGGTGTCAGCGCTTCAGACGACGGTACACTGAAGGTGTGGGATATGCGATCTAAACAACTCGCTCATTCATTAGATAACAGATTTCCAAACTTAACATGTTGCTTCAACTCATTTGGTGATTCAATAATCTCTGGTGGAATAGATAACGAAATAAAAGTATGGGACATCCGTGCGCTCAAAATATCGCTCGTTCTAAGAGGTCATTTAGACAGTGTTACTGGGATTCGTTTGAGTAAGGACGGTTCCCATCTTATTTCAAACAGTGTCGATAATTCTGGTACTTATATCTCTAACAGTTCGTATGTGGGATATCTATCCCTACTGTGCTGGAGAAAGATGCCTGAAAATGTACTTCGGCCACACGCACAATTACGAGAAAGTATTTTTAACTCCATCCAGAATCTATTGCGTTGTGGCTTTTCTCCTGACAGTAAATTTGTGGCATCTGGTTCTGGGGATAGCTTTGTCTATATTTGGGATTGCGTCACTAGAGCTCTGGTTTATAAACTCCCAGGACACGAAGGATCTGTCAACGACGTCGATTTTCATCCTACTGAACCAATCATAGCTAGTTGCAGTAAATTTTTTGTCCATCAATTGATGATATACATTTTTTCCCGCAGAATGAAAAGCTTAGGAATGAATATCCTAGAGCCAACTTTGCGTAGTAGTTTAGATCCAAGAAAATGGGACGAAAATTGA

Transcript

EVM0009788.1

Protein

Uniprot

Gene family

Uniprot term	Description
Q2HJH6	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1
Q96DI7	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1
Q6PE01	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00852	Glyco_transf_10	Glycosyltransferase family 10 (fucosyltransferase) C-term	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052234	Family	U5 snRNP Complex Component	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR038577	Homologous_superfamily	GT10-like, C-terminal domain superfamily	Interproscan
IPR001503	Family	Glycosyl transferase family 10	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44006	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006486	Biological Process	protein glycosylation	Interproscan
GO:0008417	Molecular Function	fucosyltransferase activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan