Gene detail

Detailed information of EVM0010387.1 in Myxobolus honghuensis

Genomic Location: Contig01063:2413389...2415798
NR annotation: KAF0991638.1, hypothetical protein HZS_6709, partial [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0010387.1

ATGGATTTTTTCTCAGAGCAGATTCAGAATGCCTTGACAGATATAATTAAGGCTGGAATTCTTTCAATTAAGGACCTCAAAGAGCGGATTTTCAAATGTATAACGCAGCTGCCACAAACCGAATCCCTTTATATTTTGGAAAACTTCTTCCAATCCGACACATCAAGCATTTCCGATCGCGAACAGTTTCTCTATGATTCATTTTTGGATCATATATCCCCCATGCGGAGTGCAGCGGCGAATCTCTTGACTATAAATCCTGGTGCGCAGGATCATTCTGATCGGAGCAAAATTGATGAACTTCTTGTTAGGACTGGATATTCTCTTACAATATCCAGTGAAATTAGAAAATATGGTGGACCTCCTCCTGAATGGACCGGCGAAGCTCCCGATGACTTAGATCCTAAAAAGATCCCTAGAGTTTTCATTTCTGGGTTAAAAACTGACATTTATGAAGATAAAATCATCCCAGAACTTGAAAGGTTTGGCAAAATCTACCAATCAAAGCTTTTGATATCGAATGGCGTTTCTAAAGGTGAATTGATCGTGGATTTCTCTAAAATTGAAGAAGCTCAAGCATGCATAAAAGAACTCGCCGTTAAACCGTTTTTAGGTACTTATGTATTCGCAAAACTATCCGGCGAACTACTCAAATTATACCTTATTGGAGTTCCTAAAAAAGTACCTGAAATGCAACTTGAACGTGAGATTCTACGAGTATTTCCGCACGCTAAGGATGTCACAGTTTTAAGCTTAATTACACCTCAAGGTACTAAAAAAGAGCGTACTGCAACTGTCGAATTCAAATCATTCGCAGAAGCTGAACAGGCTAAATTCAATCTCGAAAATGGTAAAATCGTCATTTTTGGAAGTAAAGTCAAAAAAGTTGACTGGAAACCTGGTGTTGATGAATATGTCGATGGTTCACCAGCTAAAATTGTTTCTGTTAATCTCGGAAAATCAAAATTAACACATCAAAAAATCAAAAATTTCTTTGAGGCATTCGGAAAAATCAAAACCCTTATTAAAAACAACACCCAAGTTTCGATAGAATACGAATCTGCCGCATCAGCTGAAACTGCCACAGTTAATGGGTTTGTCATGATCGACAATGAAAAAATCGAAGTTAAAATGTCAGAAGTTAAGAAAAACGAAATAAAAAGTCATATTATGGAAAAACCAATGGCTAAAAACCCGAAATTTTTGGAAAAGAGACGAGAATTTCTAACGAAAGGTAAAAAAGACAATAAATATCCAGACGAATATAATTCATCCCATTTAAATAAATCAGGATATGATACTCGTGACAGATTAATCACTGGCACTGTTAAACCACTGTTCGACCCTGGATATGGTTCAGATCCCTATGGTACGCAGTATCAAACTCCTTATGACGATCCATACGCTGCTCCTTATGGAAATGATAGAAATTCATATTATCAAAAAAATCCAAATAAATTAAATCCTTTAGGTTCTCAAGATTACTCATATTTAACCCAAAAAAGACTAAGAACAAGAGATGATGTTCATCACGATGATTATCATAGAGAAGACTCGAGAGAGAAATATGGAGGTTTTCATAATCAACCTGTGGAATATTTTACTCAAGAATACGAAGGTCCTTATAGCAAAGAATCATTTTTAGATTCGAGAGATTATTATACTGATTACCCACAGGATGATTTTCAAAAAGATTTCCCGCCAAAAGAGTATGAAAAAAAGGATGAAAGTAACTTTGATATTTCGAAATATGGGCGCCCGACACTGTTTTCCCAACCACCCCCTCCGCCGCAAATTTTCTCCCACCAACCACCACCTATTGGACATTTTCCTCCTAAAGAAAATAGAGGGTATGATTATCATCCCCCCGTAGTGCACGACTGGTCTCAACAGGATGAAGCTCCGTTCCCGCCAGTTATGCCGTTTGAAAGAGGATCAGAAAAGAGGAAACTTTCATCCGATGCTTATCGGTACCCTCCCGTGGATCAAAAGATGCCTGAAGAGAAATACAGTGGACAACCACGATTACGCACTAGTGTGCCCACCCAACAGGTTTCTTCTCTTAATGTTCCTTATGGAATGAATCCTCGTGGAGGTGCGGGTCAAGCCGGAGGAGCGTTCAAATACGACAGCCGAGATCCGTATCAGATGGGGCCAGGCTTTGGTTATTGA

Transcript

EVM0010387.1

ACGCAGGCGCCAATTAGCATAATTAGATGGATTTTTTCTCAGAGCAGATTCAGAATGCCTTGACAGATATAATTAAGGCTGGAATTCTTTCAATTAAGGACCTCAAAGAGCGGATTTTCAAATGTATAACGCAGCTGCCACAAACCGAATCCCTTTATATTTTGGAAAACTTCTTCCAATCCGACACATCAAGCATTTCCGATCGCGAACAGTTTCTCTATGATTCATTTTTGGATCATATATCCCCCATGCGGAGTGCAGCGGCGAATCTCTTGACTATAAATCCTGGTGCGCAGGATCATTCTGATCGGAGCAAAATTGATGAACTTCTTGTTAGGACTGGATATTCTCTTACAATATCCAGTGAAATTAGAAAATATGGTGGACCTCCTCCTGAATGGACCGGCGAAGCTCCCGATGACTTAGATCCTAAAAAGATCCCTAGAGTTTTCATTTCTGGGTTAAAAACTGACATTTATGAAGATAAAATCATCCCAGAACTTGAAAGGTTTGGCAAAATCTACCAATCAAAGCTTTTGATATCGAATGGCGTTTCTAAAGGTGAATTGATCGTGGATTTCTCTAAAATTGAAGAAGCTCAAGCATGCATAAAAGAACTCGCCGTTAAACCGTTTTTAGGTACTTATGTATTCGCAAAACTATCCGGCGAACTACTCAAATTATACCTTATTGGAGTTCCTAAAAAAGTACCTGAAATGCAACTTGAACGTGAGATTCTACGAGTATTTCCGCACGCTAAGGATGTCACAGTTTTAAGCTTAATTACACCTCAAGGTACTAAAAAAGAGCGTACTGCAACTGTCGAATTCAAATCATTCGCAGAAGCTGAACAGGCTAAATTCAATCTCGAAAATGGTAAAATCGTCATTTTTGGAAGTAAAGTCAAAAAAGTTGACTGGAAACCTGGTGTTGATGAATATGTCGATGGTTCACCAGCTAAAATTGTTTCTGTTAATCTCGGAAAATCAAAATTAACACATCAAAAAATCAAAAATTTCTTTGAGGCATTCGGAAAAATCAAAACCCTTATTAAAAACAACACCCAAGTTTCGATAGAATACGAATCTGCCGCATCAGCTGAAACTGCCACAGTTAATGGGTTTGTCATGATCGACAATGAAAAAATCGAAGTTAAAATGTCAGAAGTTAAGAAAAACGAAATAAAAAGTCATATTATGGAAAAACCAATGGCTAAAAACCCGAAATTTTTGGAAAAGAGACGAGAATTTCTAACGAAAGGTAAAAAAGACAATAAATATCCAGACGAATATAATTCATCCCATTTAAATAAATCAGGATATGATACTCGTGACAGATTAATCACTGGCACTGTTAAACCACTGTTCGACCCTGGATATGGTTCAGATCCCTATGGTACGCAGTATCAAACTCCTTATGACGATCCATACGCTGCTCCTTATGGAAATGATAGAAATTCATATTATCAAAAAAATCCAAATAAATTAAATCCTTTAGGTTCTCAAGATTACTCATATTTAACCCAAAAAAGACTAAGAACAAGAGATGATGTTCATCACGATGATTATCATAGAGAAGACTCGAGAGAGAAATATGGAGGTTTTCATAATCAACCTGTGGAATATTTTACTCAAGAATACGAAGGTCCTTATAGCAAAGAATCATTTTTAGATTCGAGAGATTATTATACTGATTACCCACAGGATGATTTTCAAAAAGATTTCCCGCCAAAAGAGTATGAAAAAAAGGATGAAAGTAACTTTGATATTTCGAAATATGGGCGCCCGACACTGTTTTCCCAACCACCCCCTCCGCCGCAAATTTTCTCCCACCAACCACCACCTATTGGACATTTTCCTCCTAAAGAAAATAGAGGGTATGATTATCATCCCCCCGTAGTGCACGACTGGTCTCAACAGGATGAAGCTCCGTTCCCGCCAGTTATGCCGTTTGAAAGAGGATCAGAAAAGAGGAAACTTTCATCCGATGCTTATCGGTACCCTCCCGTGGATCAAAAGATGCCTGAAGAGAAATACAGTGGACAACCACGATTACGCACTAGTGTGCCCACCCAACAGGTTTCTTCTCTTAATGTTCCTTATGGAATGAATCCTCGTGGAGGTGCGGGTCAAGCCGGAGGAGCGTTCAAATACGACAGCCGAGATCCGTATCAGATGGGGCCAGGCTTTGGTTATTGATAATCTTATGTTAATCATTTGTATTAGTTTTGATATCTTTTATTTTTCCTTATTACAAATATTTTCCCTTTTTCTGCTACTACTTTTTGAATCAATATTTTTTGATTTTAAAATATAATTTTTACCTTTACGCCTCTTTATTCATCTTAATGTCATCATTCTGTGGACCAAATTGACAGAGCTTTTTGTTCTTTTAATATATTTCTTTTTTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18360	hnRNP_Q_AcD	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR041337	Domain	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan