Gene detail

Detailed information of EVM0010763.1 in Myxobolus honghuensis

Genomic Location: Contig01063:1715123...1717190
NR annotation: KII62849.1, Polyadenylate-binding protein, cytoplasmic and nuclear [Thelohanellus kitauei]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

EVM0010763.1

CAAAATATAGGAAAAAATATAATAAGCAAAATTATATATTTAAAGCATTAATTATAGTTTACTATAAAAGGGCACAAAAATTGGATAATTTTATTAGTTTAGTAATTCATCTGATTTAAAGTGAAAGGTAAAAAAGATGACGATTCCTACTGCAGATATAAAAAATTGTCGAATGAAATTATATTCTCCTGTTTCTTGCGAAAATATTTCAAACGATTTCGCAACCCTCTACGTTGGAGACATCGACAAAAATTTAACCGAAATGGATTTGAAAAGAGCCTTCCAACCGTTTGCTAATGTCATTTCCATCAGAATTTGCAGGCACGAGAATAACAAAGAATCTTTCGGTTATGCGTATGTCAATATCGCGAACAAAGCGGAAGCAGAAAATGCACTAAAAAATTTAAATTGTAGAAAAATCGAAGGAAAAACATGCCGGATTTCATGGGTAGAACGAGATCCTACGAAAAGAAAATTAGGTGAAGGCAATATTTTGGTTAAAAACCTTAATACTGACGTCGATTCTCTAATTTTACTTGATTTATTTGAAAATTTAGGAGAAATCGTTTCAGTAAAAGTAAATGTGGACGAATATGGTATCAGCAAGGGATATGGATATATCAGATTTTCGAACCAGAAAGATGCCGATAAAGCGATCGAATTTTTAAAAGTTAATAATATTGTGCTTAGTGGGAAAAGAATTACTGCCGAGAAATTCGTAAGTAAGGAAGATAGACCCCTTTCTAAAATACACCATCCAAACGAATTCAAAAATATATACATAAAAAACTTCCCTAGGACCTGGAAAGATACAGATTTACATGAAAAGTTTAAAAAATTTGGCGAAATCACCAGTTGCCTTATTCAGAAAGGCGAAAACGGAGAAAGTTTGGGTTATGGATTTTGCAGTTTTTCTGAATATCAATCTGCTCTTAATGCAATAAATGAAATGAATAATTTCGAAGTCGAAAAGGGCTATAAAATTATTGTTTGTAAAGCGTTAACGATATTACAACGAAAAGCATATCTAAAAATACAGGCCGAAAAATATAGACGAGAAATGCACAATAAATTCCAATTGATGAATTTATACGTGAAAAATTTTAATGAATCAATGACAGATGAAACGTTAAAGAATCTTTTTATTAAATATGGAGAAATTTCAAGCTGCAAAGTAATGAAAGATGAGAAAAACAGAAGTAAATGTTTTGGATTTGTTTGTTTCAAAAATTTTACCGATGCAGGAAAAGCACTTGTTGAAATGAATGACAAAATAATCGATGGGCGCGCTTTATATGTATCTTACGCGCAAGAAAAGAATGATCGGGCTCAATTTTTGAAAAAAATGAGGGAGAACCCCTTTTCTTCACCTCAAGTTTCGACAAATACCCCACAAATTCCTGTTGGCAAAATTAAAATTATGCCAAATCCAAATCGAGTTCAAAATAAAAACTATCAAAAACTTAGTTATCAAAGCGAACAACATACACAAAACAATTCTATTTCTCAAAATACCAAAAATATAAATATTTGTAAAAATCAAGCACCAAATACCATATTAGAACCTCCTAAACAATTCTTAGAAAATAAAAATAAAGAAATAAATCCTATTGAAGAAGTGAAGAAAATAGATGCCAAAATTAAATTGCCTGAAATTAATACTTCAACAATAAATATAAATAAAATTATTGAAAGTATTTGTCGGAGAATTAGAAAGGAGAAAAACTACAAAGAATATCTCGAAATTGAAGCTATTGATACTTTGAAGGTTTGTTATCAAGAAATTAAAAACTTTCAATTCATAGGTATAAAAACTCAAATTAAAAACCATGCTGAAGAGATATTTAAAATCTTGGAGAAGATTACAAAAAATCCTTTCAATATTATTCCAAAAACTAATAAGGATAAAATGAAATTCTCTCAAGAATCACAAAACGATACTATAAATCCCAATCTTTTATGTCATTGTGTATGTCACACACCCTCCTTCCAAAGCTACTGGCGGTGGAACCAAAGCTCTTCAAAAGAGTACCAATTATATTAA

Protein

Uniprot

Uniprot term	Description
Q6CSV3	Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=PAB1 PE=3 SV=1
Q5AI15	Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=PAB1 PE=3 SV=1
A5DW14	Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=PAB1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24012	RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13126	PABPC; polyadenylate-binding protein	-	Spliceosome	ko03041	deepkoala