Gene detail

Detailed information of EVM0012629.1 in Myxobolus honghuensis

Genomic Location: Contig01067:276775...290231
NR annotation: KAF0992038.1, hypothetical protein HZS_6761 [Henneguya salminicola]

Gene Structure

More details in Jbrowse

Sequence

CDS

EVM0012629.1

ATGCCTAAAATATATCCTCTTATTTCCCAAACTGTAGCAAATTTAAAAGGAAAAGACGTGGTTTCTCTACTACAAAAATATTTAACTTTCGATATGAGCAAACTCCAAACTAAAAAGGCGGGATTGGCTTATTCCTGTCTTTTAAACTCCAGGGGTCGAATAGAAGGGGATTTATTCATCCATAAGAACGGAAAAAGCTATTTTCTCGAAACTCATTCAAAATGTTTTGAGAGAATTTCTGACATTTTAAACAGGTATAAAATGAGAGAACAATTTCAAATAGAGAAATTGGAAGATTCAAAAGTGTATCATATTGATTTTTCAGAGGAAACTTCAAAAGAAGTATCAGATTTAGGAATAGAAATGGACCCGAGATTTAATAAACTCGGATTTAGGTTTATCGATTTAATTAAACCTAATATAAAATTTCCATATTTAAATGTTCGGGATGAGTCGGATTATATAGACTTACGATACCAAGTAGGGATTTGCGAGGGAGAGGAACTTGCCGGTGGGGAATTCATCCCCCATAATTTTAATATGGATCTTTTAAATGCATTGTCTTTCGAGAAAGGATGTTATTTGGGGCAAGAATTGGTCACGAGAACCCAATTTATGGGTTTTATTAGAAGAAGGGTTGTTCCTTTTAACTATTTTGCAGAAAAGAAAGAAATACAAAATGTAGAAGAAATACAAAAAGAAGAAGAAAAAAACGAGGAAAAAATCAAAGAAGAAATACCAATCGAGGATAAACGAATATTCACGATCATTAAGGGCAATAATTTAGTTGAAAGCGGGAAAGTTATTTGCGAGAATAAATCGCAGAAAGCTATGAATCAAGACTATGATTTTACTGGAATAAACATAGATTGTCAATCTAGCGTTGGATTCGATTTTAACAATGCAGATCGACTCCACACCGAGGGTATGGGTGGGATCCATCTATCATATATGCCCCCAGATCAGGGTTTTATAAAAACAACGTGCTGCTATTGTTCACAAGATAATCCCGAGTGTTTGGCTCAATGTCGAATCTGCGCAAACTGGTTTTGCAACGGCGCACAAGACGCGTCAACAGGATCTCATATTGTAAAGCATCTCGTGCGCTCGAAACATAAAGAAGTCGGATTACATCCGGACAGTCCTCTAGAGGGAATTCCTCTAGAATGCTACCACTGCGGTAATAAAAACGTTTTTCTTCTCGGATTTGTTCCCGCAAAATCTGAAAGCATGGTTTTACTTTTATGTCGTTCGCCATGCGCATATCAACACACCGCCAGGGATATCGGATGTGATTTCAGCGAATGGGAGCCTATTATATCGGATAAACGATTTATATCATGGTTGATTAAAATTCCTACTGGACAGGATTTAGAAAACGTAAAACCCGTTTCTGCGATTGAAATTGCTCAGATCGATGATACTTGCGCAAATTTAGAAAATGGCGGTTATGGGAACAACGCATGTTTAGATGATAAAATTCAGAAAACGAAAAGCGTATATTCATCTCCACATGAATATCAGGAAATTTTCACTCCTTTAATTCAACTTGAAGCTGATTATGATAAACTTATGAAAGAATCTCTACACCAGAATAATGTGGTTTTAAGGTGCGAAACTTCCGTTCAGAATCGGAAGACCGTGTATTTTCAACTACCACAATCCGACTCAGAAATGCGGCTGATGCAGGGAGACGAAGTTAGCCTAACGCAGGAGGGAAGCACCAAAATGCGGCTAAAAGGAAATGTGATTAAAGTGCCGAATAATTACGGCGAGGAGATCGGCGTAGAGCTGAAACCTGGAAGTGCGTTGCCGGAAATAAAAACTGGCTGGTCGGTGGAATTTGTGTGGAAAGCGATAACATTTGACCGGATGAAAAGTGCATTTCGCGCGTTTGTCAAGAACGAATTTGATATGTCCGAAAATATCCGAAGAAGATTACTGGGTCTTGATACTCCTGACGAGCAAATCAAACTCATGTTACCAAAAAGATTTTCCGCTCCTGGTTTGCCTGAATTAAATCATTCGCAAGTTTATGCTATTAAAATGGCTCTTCAAAGACCTTTTTCACTCATTCAGGGACCTCCTGGAACTGGAAAAACCGTAACTTCGGCAACTCTCGTTTACCACATCATCAAACAATGTGGCGGCAACATCGCGGTCGATCAACTCGCGGACAAAATAAACAGAACAGGCTTAAAAGTCGTTCGAGTTTGCGCAAGAAGTCGAGAGGCCGTAGATAGCAACGTGGCCTCCCTCACTTTGCACAGCCAGATCAATTACATCGAATCTGTCCCTGAGTTTTCAAGCCTGCGCAATCTCAAGAACGACCAGGGGGAACTGACTGACGCAGATGCCAAAAAATACATAAAACTGAGAGATGTTATGGAAAAACAGATTATTTCTGAGGCTGATGTTGTATGTGCAACCTGTATCGGAGCCGGCGATCCTCGGATATTTGGCACGAAATTCAGATGCGTTTTACTCGATGAGTCTACCCAGGCCACTGAACCTGAATGTCTAGTCCCCGTCGTCCATGGAGTTAGACAACTTATTCTCGTTGGGGATCATTGTCAACTCGGTCCAGTTGTCATGTGCAAAAAAGCCGCGCATGCTGGATTATCTAAATCGCTCTTCGATCGCCTTATTGAAAATGGCGTCAAACCTTTTCGCCTTCAAGTTCAATATCGAATGCATCCGGCTTTATCCGAATTCAGTTCCTCTGCATTTTACGAGGGAACTCTTCAGAATGGAGTTACTACAGTCGAAGATCACACCCTGGAATCGACTTTCCTTGGCCGATTCCTGAAAAACCTATGTTTTTCTATTGTGCATATGGGCGGGAAGAGATTAGCTCGTCCGGCACATCTTTCCTCAATAGGTACTAAAAATTTTTATTTCGAACTGAATGTGCCGCGTGGTATAAAACCTACACAGATTGGTATTGTAACCCCATATGAGGGTCAAAGAGCATATTTAGTGTCTTATATGTTACACAGTGGCCATATGAGTGCCTCTATTTACCAAAATATTGAAGTTGCTAGCGTTGACGCATTCCAAGGGCGAGAAAAAGACTATATCATAATGACTTGTGTTCGTTCTAACGATCATCATGGAATCGGATTTCTCAACGATTCCCGTCGACTCAATGTTGCTATCACTCGGGCAAGGGAGGCCGAACTTATTAAGGAAACCATTGAAGAAAACAATGATGAAAAGATTCATGATATTTGTAATCTTCTTTTACCGGTTCCTGCCGAAAAGTTGTGTGAGAATTCAAAAACTTGTTCTATCCCACTACAAGTGATTTTACCGCCACTCGCCGAACCGGATTTGTTGAAAACAGCCGAAGAAGAGGTTCAAGAATCGCCTCCTGCCGTTGAAGAGGTTGATGATGAACAACACAAACAGAAAGATGCTTTGAAGAATGATATTTTGTCATTCGCTAAGAATTTCGCGTCTTTTAATCTCAATACTTTGATAAGTGATGAATGTAGAATTTATCGAATGAGATCCTTCGCCATCATCCAATGA

Transcript

EVM0012629.1

Protein

Uniprot

Uniprot term	Description
F1RCY6	Regulator of nonsense transcripts 1 OS=Danio rerio OX=7955 GN=upf1 PE=2 SV=1
Q92900	Regulator of nonsense transcripts 1 OS=Homo sapiens OX=9606 GN=UPF1 PE=1 SV=2
Q9EPU0	Regulator of nonsense transcripts 1 OS=Mus musculus OX=10090 GN=Upf1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18141	UPF1_1B_dom	RNA helicase UPF1, 1B domain	Domain	Interproscan
PF09416	UPF1_Zn_bind	RNA helicase (UPF2 interacting domain)	Domain	Interproscan
PF01571	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan
PF13087	AAA_12	AAA domain	Domain	Interproscan
PF13086	AAA_11	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040812	Domain	RNA helicase UPF1, 1B domain	Interproscan
IPR047187	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR018999	Domain	RNA helicase UPF1, Cys/His rich zinc-binding domain	Interproscan
IPR017703	Conserved_site	YgfZ/GcvT conserved site	Interproscan
IPR006222	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR027266	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041679	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR045055	Family	DNA2/NAM7-like helicase	Interproscan
IPR041677	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan