Gene detail

Detailed information of EVM0014348.1 in Myxobolus honghuensis

Genomic Location: Contig00938:586963...589177
NR annotation: KAF3452786.1, hypothetical protein FNV43_RR03219 [Rhamnella rubrinervis]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9SUM2	Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At4g30220 PE=3 SV=1
Q3T0Z8	Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2
P62306	Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF01423	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034100	Family	Small nuclear ribonucleoprotein F	Interproscan
IPR016487	Family	Sm-like protein Lsm6/SmF	Interproscan
IPR001163	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR047575	Domain	Sm domain	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000387	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005685	Cellular Component	U1 snRNP	Interproscan
GO:0034715	Cellular Component	pICln-Sm protein complex	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan